Detailed information NTG0602425

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NHF37_RS21560
• Genome accession: NZ_CP099590
• Coordinates: 4427545..4428570 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain WG1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4422545..4433570

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHF37_RS21540 (NHF37_21540)	metJ	4423606..4423923 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NHF37_RS21545 (NHF37_21545)	yiiX	4424107..4424715 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NHF37_RS21550 (NHF37_21550)	rpmE	4424776..4424988 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NHF37_RS21555 (NHF37_21555)	priA	4425191..4427389 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
NHF37_RS21560 (NHF37_21560)	cytR	4427545..4428570 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NHF37_RS21565 (NHF37_21565)	ftsN	4428662..4429621 (+)	960	WP_000068828.1	cell division protein FtsN	-
NHF37_RS21570 (NHF37_21570)	hslV	4429714..4430244 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NHF37_RS21575 (NHF37_21575)	hslU	4430254..4431585 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NHF37_RS21580 (NHF37_21580)	menA	4431652..4432578 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NHF37_RS21585 (NHF37_21585)	rraA	4432671..4433156 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NHF37_RS21590 (NHF37_21590)	zapB	4433241..4433486 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=602425 NHF37_RS21560 WP_000644904.1 4427545..4428570(+) (cytR) [Escherichia coli strain WG1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=602425 NHF37_RS21560 WP_000644904.1 4427545..4428570(+) (cytR) [Escherichia coli strain WG1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628