Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K8B70_RS16330 Genome accession   NZ_CP082799
Coordinates   3273937..3274533 (-) Length   198 a.a.
NCBI ID   WP_117065160.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain SCAID TST1-2021 (15/226)     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3268937..3279533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B70_RS16315 (K8B70_16315) helD 3269145..3271199 (-) 2055 WP_004176653.1 DNA helicase IV -
  K8B70_RS16320 (K8B70_16320) - 3271324..3271770 (+) 447 WP_002898425.1 YccF domain-containing protein -
  K8B70_RS16325 (K8B70_16325) yccS 3271788..3273923 (+) 2136 WP_002898422.1 YccS family putative transporter -
  K8B70_RS16330 (K8B70_16330) sxy/tfoX 3273937..3274533 (-) 597 WP_117065160.1 TfoX/Sxy family DNA transformation protein Regulator
  K8B70_RS16335 (K8B70_16335) sulA 3274882..3275391 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  K8B70_RS16340 (K8B70_16340) ompA 3275744..3276814 (+) 1071 WP_002898408.1 porin OmpA -
  K8B70_RS16345 (K8B70_16345) matP 3276946..3277398 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  K8B70_RS16350 (K8B70_16350) - 3277584..3279341 (+) 1758 WP_020804925.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22548.17 Da        Isoelectric Point: 10.0350

>NTDB_id=602382 K8B70_RS16330 WP_117065160.1 3273937..3274533(-) (sxy/tfoX) [Klebsiella pneumoniae strain SCAID TST1-2021 (15/226)]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRMEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=602382 K8B70_RS16330 WP_117065160.1 3273937..3274533(-) (sxy/tfoX) [Klebsiella pneumoniae strain SCAID TST1-2021 (15/226)]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGATGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.282

98.485

0.505