Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   K6J59_RS01950 Genome accession   NZ_AP018782
Coordinates   398544..398840 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   A0ABY1VSI5
Organism   Haemophilus influenzae strain CHBN-V-2 isolate 13H37     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 393544..403840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J59_RS01940 (CHBNV2_03640) - 395025..398099 (+) 3075 WP_221276220.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K6J59_RS01945 (CHBNV2_03650) - 398369..398551 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  K6J59_RS01950 (CHBNV2_03660) HI0659 398544..398840 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  K6J59_RS01955 (CHBNV2_03670) - 399024..400940 (+) 1917 WP_020910212.1 ABC transporter ATP-binding protein -
  K6J59_RS01960 (CHBNV2_03680) - 400950..401486 (+) 537 WP_020910213.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  K6J59_RS01965 (CHBNV2_03690) - 401502..402053 (+) 552 WP_020910214.1 Sua5/YciO/YrdC/YwlC family protein -
  K6J59_RS01970 (CHBNV2_03700) aroE 402057..402863 (+) 807 WP_020910215.1 shikimate dehydrogenase -
  K6J59_RS01975 (CHBNV2_03710) - 402875..403627 (+) 753 WP_020910216.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=60218 K6J59_RS01950 WP_005650837.1 398544..398840(+) (HI0659) [Haemophilus influenzae strain CHBN-V-2 isolate 13H37]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=60218 K6J59_RS01950 WP_005650837.1 398544..398840(+) (HI0659) [Haemophilus influenzae strain CHBN-V-2 isolate 13H37]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAACAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGAAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterProScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment