Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K6959_RS17970 Genome accession   NZ_CP082780
Coordinates   3691901..3692854 (+) Length   317 a.a.
NCBI ID   WP_223088432.1    Uniprot ID   -
Organism   Bacillus aquiflavi strain 3H-10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3686901..3697854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS17950 (K6959_17950) - 3688339..3688551 (-) 213 WP_223087213.1 hypothetical protein -
  K6959_RS17955 (K6959_17955) dcd 3688847..3689404 (+) 558 WP_163242460.1 dCTP deaminase -
  K6959_RS17960 (K6959_17960) - 3689444..3690082 (-) 639 WP_223088428.1 hemolysin III family protein -
  K6959_RS17965 (K6959_17965) - 3690729..3691673 (+) 945 WP_223088430.1 manganese-dependent inorganic pyrophosphatase -
  K6959_RS17970 (K6959_17970) ceuB 3691901..3692854 (+) 954 WP_223088432.1 ABC transporter permease Machinery gene
  K6959_RS17975 (K6959_17975) - 3692847..3693794 (+) 948 WP_163242457.1 iron chelate uptake ABC transporter family permease subunit -
  K6959_RS17980 (K6959_17980) - 3693791..3694549 (+) 759 WP_223087215.1 ABC transporter ATP-binding protein -
  K6959_RS17985 (K6959_17985) - 3694686..3695643 (+) 958 Protein_3597 siderophore ABC transporter substrate-binding protein -
  K6959_RS17990 (K6959_17990) - 3695794..3696525 (+) 732 WP_163242454.1 DsbA family oxidoreductase -
  K6959_RS17995 (K6959_17995) - 3696603..3696983 (-) 381 WP_163242453.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35414.83 Da        Isoelectric Point: 10.0818

>NTDB_id=602170 K6959_RS17970 WP_223088432.1 3691901..3692854(+) (ceuB) [Bacillus aquiflavi strain 3H-10]
MKKRYLISILIILSFTSLFVGVSDLNPLDIFQLTDDQLNTLLVSRFPRLINIIIAGVSLSISGLMMQQLTMNKFVSPTTA
GTLDSARLGILVSLMFFTSASPFIKMLVAFIFALLGTYIFMKILDRIKFKDAIFIPLVGLMFGNIIGSITTFFALKNDLV
QNMSSWLQGNFSMMIEGRYELLYISIPIVFIAYLFANKFTIAGMGEEFAVNLGLNHKKIVNIGLIIVALVTSVVVLTIGM
IPFLGLIIPNIVTIYRGDHLKKSLLHTALLGAVFLLACDIFGRVIIYPYEIPIGVTVGMIGSRIFFFYLIMRRRAYE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=602170 K6959_RS17970 WP_223088432.1 3691901..3692854(+) (ceuB) [Bacillus aquiflavi strain 3H-10]
ATAAAAAAAAGGTACTTAATTTCCATACTTATTATTTTATCCTTTACATCACTTTTTGTCGGTGTAAGTGATCTGAATCC
GTTAGACATTTTTCAGTTAACTGACGATCAGCTTAATACTTTACTTGTGAGTAGATTTCCCCGTTTAATCAATATCATAA
TTGCGGGAGTGAGCTTAAGTATAAGCGGATTAATGATGCAGCAGTTGACGATGAATAAGTTTGTTTCTCCGACGACAGCT
GGGACACTTGATTCTGCTAGACTGGGAATTTTAGTTTCGCTTATGTTTTTTACTTCAGCTAGTCCGTTCATAAAAATGTT
AGTTGCCTTTATTTTTGCGCTGCTTGGAACGTATATTTTTATGAAAATATTAGACAGGATCAAGTTTAAGGATGCTATTT
TTATCCCTTTAGTTGGACTGATGTTTGGAAATATTATTGGCTCAATTACGACCTTTTTTGCCTTGAAAAATGACTTAGTT
CAAAATATGTCTTCATGGCTGCAAGGGAATTTTTCTATGATGATTGAAGGACGATATGAGCTGTTATATATTAGCATCCC
GATCGTATTTATTGCCTATCTTTTTGCTAATAAGTTTACGATTGCTGGAATGGGAGAGGAATTCGCTGTTAATTTAGGGC
TTAACCATAAGAAAATCGTTAATATCGGTTTGATTATCGTGGCATTAGTTACTTCAGTTGTTGTCCTTACCATAGGAATG
ATTCCGTTTCTCGGCTTAATTATTCCGAACATCGTAACAATATATCGAGGAGATCATTTGAAGAAAAGCTTGTTACATAC
TGCCTTATTAGGAGCTGTATTTTTATTAGCTTGTGATATTTTTGGAAGGGTTATTATTTATCCGTATGAGATTCCAATCG
GTGTGACGGTCGGTATGATTGGCAGCAGGATTTTTTTTTTTTATTTAATCATGAGGAGAAGAGCATATGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.185

99.054

0.527