Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K6959_RS16950 Genome accession   NZ_CP082780
Coordinates   3496769..3497053 (-) Length   94 a.a.
NCBI ID   WP_223087115.1    Uniprot ID   -
Organism   Bacillus aquiflavi strain 3H-10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3491769..3502053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS16915 (K6959_16915) - 3492023..3492352 (+) 330 WP_163242112.1 cyclic-di-AMP receptor -
  K6959_RS16920 (K6959_16920) holB 3492474..3493481 (+) 1008 WP_163242111.1 DNA polymerase III subunit delta' -
  K6959_RS16925 (K6959_16925) - 3493474..3494301 (+) 828 WP_223087112.1 stage 0 sporulation family protein -
  K6959_RS16930 (K6959_16930) yabA 3494314..3494688 (+) 375 WP_163242109.1 DNA replication initiation control protein YabA -
  K6959_RS16935 (K6959_16935) - 3494764..3495507 (+) 744 WP_163242108.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  K6959_RS16940 (K6959_16940) - 3495494..3495778 (+) 285 WP_223087113.1 GIY-YIG nuclease family protein -
  K6959_RS16945 (K6959_16945) rsmI 3495756..3496637 (+) 882 WP_163242106.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  K6959_RS16950 (K6959_16950) abrB 3496769..3497053 (-) 285 WP_223087115.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K6959_RS16955 (K6959_16955) metG 3497671..3499614 (+) 1944 WP_163242104.1 methionine--tRNA ligase -
  K6959_RS16960 (K6959_16960) - 3499951..3500720 (+) 770 Protein_3413 TatD family hydrolase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10581.38 Da        Isoelectric Point: 7.9990

>NTDB_id=602167 K6959_RS16950 WP_223087115.1 3496769..3497053(-) (abrB) [Bacillus aquiflavi strain 3H-10]
MKSTGIVRKVDELGRVVIPIELRRTLEIAEKDALEIYVDDDKIILKKYKPNMTCHVTGEVSDKNVSLAGGKLILSRAGAE
QLIREIQKSFDEIK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=602167 K6959_RS16950 WP_223087115.1 3496769..3497053(-) (abrB) [Bacillus aquiflavi strain 3H-10]
ATGAAATCTACAGGTATTGTTCGTAAAGTTGATGAGTTAGGTCGTGTGGTAATCCCAATTGAATTAAGACGTACTTTAGA
AATTGCAGAGAAGGATGCTCTAGAAATTTACGTTGACGATGATAAAATCATCTTAAAAAAATACAAACCAAACATGACTT
GTCACGTTACAGGTGAAGTTTCCGACAAAAACGTTTCATTAGCTGGCGGAAAATTAATTTTAAGCCGTGCTGGTGCAGAA
CAACTGATAAGAGAAATTCAAAAATCATTTGATGAAATTAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

81.915

100

0.819