Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   K6959_RS16750 Genome accession   NZ_CP082780
Coordinates   3455232..3456350 (+) Length   372 a.a.
NCBI ID   WP_223087103.1    Uniprot ID   -
Organism   Bacillus aquiflavi strain 3H-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3453736..3479963 3455232..3456350 within 0


Gene organization within MGE regions


Location: 3453736..3479963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS16740 (K6959_16740) dnaN 3453736..3454872 (+) 1137 WP_223087101.1 DNA polymerase III subunit beta -
  K6959_RS16745 (K6959_16745) yaaA 3454999..3455217 (+) 219 WP_163242312.1 S4 domain-containing protein YaaA -
  K6959_RS16750 (K6959_16750) recF 3455232..3456350 (+) 1119 WP_223087103.1 DNA replication/repair protein RecF Machinery gene
  K6959_RS16755 (K6959_16755) remB 3456360..3456617 (+) 258 WP_163242314.1 extracellular matrix regulator RemB -
  K6959_RS16760 (K6959_16760) gyrB 3456945..3458873 (+) 1929 WP_223088419.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  K6959_RS16765 (K6959_16765) gyrA 3459108..3461591 (+) 2484 WP_223087104.1 DNA gyrase subunit A -
  K6959_RS16770 (K6959_16770) - 3461703..3463268 (-) 1566 Protein_3386 IS1182 family transposase -
  K6959_RS16800 (K6959_16800) - 3469306..3470277 (-) 972 WP_163242327.1 YaaC family protein -
  K6959_RS16805 (K6959_16805) guaB 3470394..3471860 (+) 1467 WP_223087106.1 IMP dehydrogenase -
  K6959_RS16810 (K6959_16810) - 3472143..3473471 (+) 1329 WP_394373007.1 D-alanyl-D-alanine carboxypeptidase family protein -
  K6959_RS16815 (K6959_16815) pdxS 3473624..3474508 (+) 885 WP_223088422.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  K6959_RS16820 (K6959_16820) pdxT 3474523..3475092 (+) 570 WP_223087107.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  K6959_RS16825 (K6959_16825) serS 3475467..3476741 (+) 1275 WP_223087109.1 serine--tRNA ligase -
  K6959_RS16835 (K6959_16835) tadA 3477229..3477741 (+) 513 WP_223087110.1 tRNA adenosine(34) deaminase TadA -
  K6959_RS16845 (K6959_16845) dnaX 3478281..3479963 (+) 1683 WP_163242322.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43167.66 Da        Isoelectric Point: 7.6377

>NTDB_id=602165 K6959_RS16750 WP_223087103.1 3455232..3456350(+) (recF) [Bacillus aquiflavi strain 3H-10]
MYIEQLQLKNYRNYESLEIEFENKVNFFLGENAQGKTNVMESIYVLAMAKSHRTSNDKELIRWEEEYAKIEGRIQKYHGA
LPMQLTISKKGKKAKCNHIEQRKLSQYVGNLNVVMFAPEDLHLVKGSPQVRRRFIDMEIGQVSPLYLHDIGKYQKILQQR
NQFLKLLQTRKQTDKTVLEVLTEQFIDVAVKIIIKRFNFLRMLEKWAKPIHGGITRDQESLKIVYKPSVDVLEEHQLSKM
IEVFQEKFIKIGEKEIERGTTLFGPHRDDVLFFVNDRDVQTFGSQGQQRTTALSVKLAEIELIHSEIGEYPILLLDDVLS
ELDDFRQSHLLNTIQGKVQTFVTTTSIEGIDHQTLNNASLFNVEAGQIGKVQ

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=602165 K6959_RS16750 WP_223087103.1 3455232..3456350(+) (recF) [Bacillus aquiflavi strain 3H-10]
ATGTATATTGAGCAACTACAGTTGAAAAATTACCGTAACTATGAGAGCTTGGAGATAGAATTTGAAAATAAAGTAAACTT
TTTTTTAGGGGAAAATGCTCAAGGTAAAACAAATGTAATGGAATCGATCTATGTTTTGGCAATGGCCAAATCCCATCGAA
CGTCAAATGATAAAGAACTTATTCGCTGGGAAGAAGAGTATGCTAAAATAGAAGGTAGGATCCAAAAATACCATGGCGCA
TTGCCAATGCAGCTAACGATATCTAAAAAAGGTAAAAAGGCCAAATGTAACCATATTGAGCAGCGGAAATTAAGCCAGTA
CGTAGGGAACTTGAACGTAGTCATGTTCGCACCTGAAGATCTTCATCTTGTTAAAGGGAGCCCACAAGTTAGACGTCGTT
TTATTGATATGGAAATTGGGCAAGTATCTCCATTATACCTTCATGACATCGGAAAATATCAAAAAATTTTACAGCAAAGA
AATCAATTTTTAAAGCTACTCCAAACGAGGAAACAAACGGATAAGACAGTACTTGAAGTATTAACTGAGCAGTTTATTGA
CGTTGCTGTTAAAATTATTATAAAGCGCTTTAATTTTTTAAGAATGCTTGAAAAGTGGGCGAAACCTATTCATGGGGGTA
TTACACGTGATCAAGAATCATTAAAAATTGTATATAAACCGTCCGTTGATGTATTAGAAGAGCATCAATTGTCGAAAATG
ATAGAAGTGTTTCAAGAAAAATTTATTAAAATAGGGGAAAAAGAAATTGAACGGGGAACTACGCTGTTTGGTCCGCACCG
TGATGACGTTCTTTTTTTCGTCAATGATCGCGATGTGCAAACGTTCGGATCTCAAGGTCAGCAAAGAACTACTGCCTTAT
CAGTTAAACTTGCTGAAATAGAGTTAATCCATTCTGAAATTGGTGAGTACCCAATTTTACTATTGGATGATGTTCTTTCT
GAATTAGATGATTTTCGCCAATCACATTTATTAAATACGATTCAAGGAAAAGTGCAAACTTTTGTAACGACTACGAGTAT
TGAAGGAATTGACCACCAAACATTAAATAATGCTTCCCTGTTTAATGTTGAGGCAGGACAAATTGGCAAAGTCCAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

71.081

99.462

0.707