Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   DVS74_RS07235 Genome accession   NZ_CP099516
Coordinates   1580501..1582303 (+) Length   600 a.a.
NCBI ID   WP_128283909.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain ESVL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1575501..1587303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVS74_RS07230 (DVS74_007220) - 1579779..1580321 (+) 543 WP_004083813.1 Dps family protein -
  DVS74_RS07235 (DVS74_007225) recQ 1580501..1582303 (+) 1803 WP_128283909.1 DNA helicase RecQ Machinery gene
  DVS74_RS07240 (DVS74_007230) - 1582426..1582905 (+) 480 WP_004083818.1 hypothetical protein -
  DVS74_RS07245 (DVS74_007235) - 1583106..1584071 (-) 966 WP_128283910.1 LLM class flavin-dependent oxidoreductase -
  DVS74_RS07250 (DVS74_007240) radA/sms 1584249..1585640 (+) 1392 WP_011097721.1 DNA repair protein RadA Machinery gene
  DVS74_RS07255 (DVS74_007245) trpA 1585881..1586687 (-) 807 WP_004083823.1 tryptophan synthase subunit alpha -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 67510.23 Da        Isoelectric Point: 8.4221

>NTDB_id=602159 DVS74_RS07235 WP_128283909.1 1580501..1582303(+) (recQ) [Xylella fastidiosa subsp. multiplex strain ESVL]
MSTSSATQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVIISPLIALMQDQVETLR
QLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERLLTAHFLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLT
VLHERWPHVPRIALTATADPPTQREIAERLDLSDAHHFISSFDRPNIRYTVVQKNNMRRQLQEFLSRHRNTAGIVYAMSR
RKTEEIAAYLCTQGYNALPYHAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR
AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLLLSSFGETYPNPCGNCDNCLT
PATAWDATVLSQKALSCVYRTGQRFGVGHLIDILRGSKSQRILQLGHDQLSTYGIGRDVDERSWRSVFRQLIATHLLEVD
NEGYGGLRLTPSSRPVLKGERQVMMRRDQFIRERDRTGQRHGLSVLPEDLGLFNALHRLRAQLAKEQNVPAFVIFHDSTL
RHIAEQRPTNLNALSKISGIGSNKLTRYGHQLIELVLAQG

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=602159 DVS74_RS07235 WP_128283909.1 1580501..1582303(+) (recQ) [Xylella fastidiosa subsp. multiplex strain ESVL]
ATGAGCACGTCTTCCGCCACCCAGACCGTTCTACAACGCGTCTTCGGCTACGACACCTTCCGTGGGCCCCAGCAAGCCAT
CATTGAGCATGTCGCTGCCGGCCACGATGCCTTGGTCCTGATGCCCACCGGGGGCGGCAAATCATTGTGCTACCAAGTGC
CTGCGCTGCTGCGCAAAGGCATCGGCGTAATCATCTCGCCGCTGATTGCACTGATGCAAGACCAAGTCGAGACCCTACGT
CAGCTTGGCGTACGCGCCGCCTATCTCAACTCGACCCTAGATGCAACGCAGGCACAACGGATCGAACACGCTCTAGTCAC
CGCAGATCTAGACCTGCTGTATATCGCTCCGGAACGGTTACTCACTGCACACTTCTTATCGCTGCTGGAACGTAGCCAGA
TCGCTTTGTTCGCCATCGACGAAGCTCACTGCGTCTCACAGTGGGGACATGATTTCCGTCCCGAATACCGCCAACTCACC
GTACTTCATGAACGCTGGCCACACGTGCCTCGGATTGCACTGACCGCAACCGCCGACCCACCCACACAACGCGAAATTGC
TGAGCGCCTTGACCTAAGCGATGCGCATCACTTCATCAGCTCATTCGACCGCCCCAACATCCGCTACACAGTCGTACAGA
AAAACAATATGCGGCGCCAACTACAAGAATTCCTCAGCCGCCATCGCAACACCGCAGGCATTGTCTACGCCATGTCACGG
CGCAAAACCGAAGAAATCGCCGCCTATCTGTGTACACAAGGCTACAACGCACTGCCTTACCATGCCGGCCTACCAGCCGA
AACACGGGCCAAGCACCAACGCTGCTTTCTGCGTGAAGAAGGGATTGTGATGTGTGCCACCATCGCCTTCGGCATGGGCA
TCAACAAACCTGATGTCCGCTTTGTCGCCCACATCGACCTCCCCAAATCACTGGAGGGTTATTACCAGGAAACCGGCCGC
GCCGGCCGCGATGGCGAAGCTGCAGAAGCATGGATGTGCTATAGCCTGGGAGACGTCGTACTGCTGAAACAAATGATCGA
ACAAAGCGAAGCCAGCGAAGCACGCAAGTGCGTAGAACGCGCCAAACTCGATCACCTGCTGGGCTACTGTGAATCAATGC
AATGCCGCCGCCAACTCTTACTGTCAAGCTTCGGGGAAACCTATCCAAACCCCTGTGGCAACTGTGACAACTGCCTGACC
CCAGCCACCGCCTGGGATGCCACCGTGCTCTCCCAAAAGGCGTTAAGTTGCGTCTACCGCACTGGCCAGCGCTTCGGGGT
TGGCCACCTAATCGACATACTACGTGGCAGTAAGAGCCAAAGAATATTGCAACTGGGTCATGACCAACTCAGCACCTACG
GCATCGGCCGTGACGTGGATGAACGCAGCTGGCGCAGTGTCTTTCGCCAACTCATCGCCACACACCTGTTGGAGGTCGAC
AACGAAGGCTACGGCGGCTTACGCCTGACCCCAAGCAGTCGTCCAGTCCTCAAAGGCGAACGCCAAGTCATGATGCGTCG
TGATCAGTTCATCCGTGAACGCGACCGTACCGGCCAACGTCACGGACTATCGGTCCTCCCGGAAGATCTGGGACTCTTCA
ATGCCCTGCATCGCTTACGTGCACAACTAGCCAAAGAACAAAACGTGCCGGCATTCGTGATCTTCCATGACAGCACCTTG
CGCCATATTGCCGAGCAACGCCCTACTAACCTCAATGCACTGAGCAAAATCAGCGGGATCGGCAGCAACAAACTGACACG
CTATGGCCATCAGTTAATTGAACTCGTACTTGCGCAAGGGTGA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-509)

Helicase conserved C-terminal domain (Helicase_C)

(220-324)

RecQ zinc-binding (RecQ_Zn_bind)

(337-399)

DEAD/DEAH box helicase (DEAD)

(24-179)

HRDC domain (HRDC)

(530-596)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.28

98.833

0.378