Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K6959_RS11195 Genome accession   NZ_CP082780
Coordinates   2312163..2312915 (-) Length   250 a.a.
NCBI ID   WP_223088369.1    Uniprot ID   -
Organism   Bacillus aquiflavi strain 3H-10     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2307163..2317915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS11175 (K6959_11175) - 2307221..2308021 (-) 801 WP_223088368.1 pyruvate, water dikinase regulatory protein -
  K6959_RS11180 (K6959_11180) - 2308059..2308697 (-) 639 WP_223086523.1 helix-turn-helix transcriptional regulator -
  K6959_RS19865 - 2308885..2309388 (-) 504 WP_394372989.1 DALR anticodon-binding domain-containing protein -
  K6959_RS11185 (K6959_11185) glyS 2309360..2310958 (-) 1599 WP_394372990.1 glycine--tRNA ligase subunit beta -
  K6959_RS11190 (K6959_11190) glyQ 2310951..2311841 (-) 891 WP_163239434.1 glycine--tRNA ligase subunit alpha -
  K6959_RS11195 (K6959_11195) recO 2312163..2312915 (-) 753 WP_223088369.1 DNA repair protein RecO Machinery gene
  K6959_RS11200 (K6959_11200) - 2312947..2313090 (-) 144 WP_163239436.1 YqzL family protein -
  K6959_RS11205 (K6959_11205) era 2313232..2314146 (-) 915 WP_223086525.1 GTPase Era -
  K6959_RS11210 (K6959_11210) - 2314136..2314537 (-) 402 WP_163239440.1 cytidine deaminase -
  K6959_RS11215 (K6959_11215) - 2314684..2315100 (-) 417 WP_163239442.1 diacylglycerol kinase family protein -
  K6959_RS11220 (K6959_11220) ybeY 2315078..2315548 (-) 471 WP_163239444.1 rRNA maturation RNase YbeY -
  K6959_RS11225 (K6959_11225) - 2315545..2317710 (-) 2166 WP_223086526.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28777.19 Da        Isoelectric Point: 9.2379

>NTDB_id=602146 K6959_RS11195 WP_223088369.1 2312163..2312915(-) (recO) [Bacillus aquiflavi strain 3H-10]
MLQKCEAIVIRTTDYGETNKIVTLYTREWGKVGVMARGAKKPNSRLAAITQYFTYGYFLLQRGKGLGSLQQGEIISSFRS
IREDIFLTAYASYVVDLTDKGTEENKPNPYLFELLYQTLNYMNDGYDLDILTNIFEMKKLNTLGLYPSLNECSFCGSTEG
NFSFSIREGGFICHRCLTKDPYHLKISPATGKLLRLFYYFDLTRLGSISVKKETKQELKKVITAYYDEYSGLKLKSKKFL
DQIEQLRNKL

Nucleotide


Download         Length: 753 bp        

>NTDB_id=602146 K6959_RS11195 WP_223088369.1 2312163..2312915(-) (recO) [Bacillus aquiflavi strain 3H-10]
GTGCTGCAAAAATGTGAAGCCATCGTCATTAGAACAACCGATTACGGTGAAACAAACAAAATTGTCACTTTATATACACG
TGAATGGGGAAAGGTTGGTGTGATGGCAAGAGGGGCGAAAAAGCCGAACAGCCGCCTCGCTGCTATCACCCAGTATTTTA
CATATGGGTATTTTCTATTACAGCGTGGAAAGGGGTTAGGCAGTTTACAGCAAGGAGAAATAATTTCCTCATTCCGTTCC
ATTCGGGAAGATATCTTTTTAACAGCATATGCTAGCTATGTTGTTGATCTAACAGATAAAGGTACTGAGGAAAACAAACC
TAATCCGTATTTATTTGAATTACTGTATCAAACATTAAATTATATGAACGATGGCTATGATCTAGACATTTTAACAAATA
TTTTTGAGATGAAAAAGCTAAATACACTGGGACTATATCCATCATTAAATGAATGTAGTTTTTGTGGAAGTACTGAAGGA
AACTTTTCCTTTTCTATTCGCGAAGGCGGTTTTATTTGTCATCGCTGTTTAACAAAAGATCCATATCACTTAAAAATTTC
TCCTGCTACCGGAAAGCTTTTACGGCTATTTTATTATTTTGATTTGACCCGTCTCGGTTCTATTTCTGTAAAAAAAGAGA
CGAAACAGGAGCTTAAAAAAGTGATAACTGCTTATTATGATGAGTATTCGGGTTTAAAGCTTAAGTCAAAAAAATTTCTT
GACCAAATCGAGCAATTAAGAAATAAATTATAG

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

64.919

99.2

0.644