Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K6959_RS10670 Genome accession   NZ_CP082780
Coordinates   2212138..2213826 (-) Length   562 a.a.
NCBI ID   WP_223086484.1    Uniprot ID   -
Organism   Bacillus aquiflavi strain 3H-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2207138..2218826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS10645 (K6959_10645) - 2207658..2207900 (+) 243 WP_223086482.1 DUF2627 domain-containing protein -
  K6959_RS10650 (K6959_10650) - 2208095..2208814 (-) 720 WP_163239543.1 glycerophosphodiester phosphodiesterase -
  K6959_RS10655 (K6959_10655) spo0A 2208995..2209780 (-) 786 WP_163239196.1 sporulation transcription factor Spo0A Regulator
  K6959_RS10660 (K6959_10660) spoIVB 2210069..2211351 (-) 1283 Protein_2161 SpoIVB peptidase -
  K6959_RS10665 (K6959_10665) - 2211755..2212009 (-) 255 WP_163239200.1 hypothetical protein -
  K6959_RS10670 (K6959_10670) recN 2212138..2213826 (-) 1689 WP_223086484.1 DNA repair protein RecN Machinery gene
  K6959_RS10675 (K6959_10675) ahrC 2213846..2214295 (-) 450 WP_163239204.1 transcriptional regulator AhrC/ArgR -
  K6959_RS10680 (K6959_10680) - 2214578..2214979 (+) 402 WP_394373037.1 GNAT family N-acetyltransferase -
  K6959_RS10685 (K6959_10685) - 2215249..2216079 (-) 831 WP_163239545.1 TlyA family RNA methyltransferase -
  K6959_RS10690 (K6959_10690) dxs 2216086..2217978 (-) 1893 Protein_2167 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 64030.00 Da        Isoelectric Point: 5.0843

>NTDB_id=602144 K6959_RS10670 WP_223086484.1 2212138..2213826(-) (recN) [Bacillus aquiflavi strain 3H-10]
MLSVLSIKNFAIIDSLSISFENGLTVLTGETGAGKSIIIDAIHLLVGGRGSHEFVRHGEQKAEIEGLFQLDDVKHPCYDK
AEELGIKIEDGMLVLRRDISKNGKSVCRINGKLVTIAILREIGQTLVDIHGQHEHQQLMDETMHLSLLDQFGGEEIALAL
VEYKHIYRKYEQLNQKIKNITENEQQMAHRLDLLQFQLNEIQTAQLKQDEDGQLFEERNELVNFERVFEALKSCYSALQG
EQKGLDWIGLAMSFLENGVELNPKYKELFESVTTSFYLLEDAATTVRNELDCLEYNPERLNEIENRIIEINQLKRKYGQT
IDAILEYAAMIEEEIETLENREVHVSQLENKLTSLRKDLELEGKQLTDLRHQYGKKLTELIHRELKELYMEKTVFSVHFN
ENFNRFTESGADEVQFYLSTNPGEPLKPLSKIASGGELSRIMLALKSIFSKNQGITSIIFDEVDTGVSGRVAQAIAEKIY
KVSTHSQVFCISHLPQVAAMADTHLYISKKIKNDRTYTTVTPLENSEKVKEIGRMISGVEITDLTTEHAKELLQLAEKLK
NK

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=602144 K6959_RS10670 WP_223086484.1 2212138..2213826(-) (recN) [Bacillus aquiflavi strain 3H-10]
ATGTTAAGTGTACTTTCAATAAAAAATTTTGCAATTATTGATTCCCTATCCATTTCTTTTGAAAACGGTTTAACTGTATT
AACTGGAGAAACGGGTGCTGGTAAATCAATTATTATTGATGCGATTCATTTATTAGTTGGCGGAAGGGGATCACATGAGT
TTGTCCGACACGGTGAACAAAAAGCTGAAATAGAGGGACTTTTTCAACTTGATGACGTGAAGCATCCTTGCTATGACAAA
GCAGAAGAACTTGGCATAAAGATAGAAGATGGAATGCTTGTTTTGCGGCGAGATATTTCAAAAAATGGGAAAAGTGTTTG
TAGAATAAATGGAAAATTAGTAACGATCGCCATTTTGCGGGAAATTGGTCAGACGTTAGTCGATATTCACGGGCAGCATG
AGCACCAACAGCTGATGGATGAAACTATGCATTTATCGCTTTTAGATCAATTTGGGGGAGAAGAGATCGCGCTAGCACTA
GTTGAATATAAGCATATTTATCGAAAATATGAACAATTGAATCAAAAAATAAAAAATATAACTGAAAATGAACAACAAAT
GGCACATCGTCTTGATTTGCTTCAATTTCAGCTTAATGAAATCCAAACAGCTCAATTAAAGCAAGATGAAGATGGACAGT
TATTTGAAGAACGAAACGAGCTTGTTAACTTTGAACGGGTATTTGAGGCTTTAAAATCGTGTTACTCAGCTCTCCAAGGT
GAACAGAAAGGACTCGATTGGATTGGGTTAGCAATGAGCTTTTTGGAAAATGGAGTAGAGTTAAATCCAAAATATAAGGA
GTTATTTGAGTCTGTTACAACGAGCTTCTATTTGCTAGAGGATGCTGCAACTACAGTTAGAAATGAGCTAGATTGTTTAG
AATACAACCCCGAACGATTAAATGAAATAGAAAATCGTATAATTGAAATTAATCAATTAAAACGAAAGTACGGTCAAACA
ATCGATGCTATTTTAGAATATGCAGCGATGATTGAAGAAGAAATAGAAACGTTAGAGAATCGAGAGGTTCATGTTAGCCA
ATTAGAAAACAAACTTACCTCCTTACGAAAAGATTTGGAACTTGAAGGAAAACAGCTGACAGATTTGCGGCATCAATACG
GAAAGAAATTAACTGAATTAATTCATCGTGAATTAAAAGAACTTTACATGGAGAAAACCGTTTTTAGCGTCCATTTTAAT
GAAAATTTCAATCGCTTCACCGAAAGTGGTGCAGATGAAGTGCAATTTTATTTATCAACTAATCCAGGAGAGCCGTTAAA
ACCATTATCGAAAATTGCTTCTGGAGGGGAACTTTCACGGATTATGCTTGCATTAAAAAGTATTTTTTCAAAAAATCAAG
GAATTACTTCAATTATATTTGATGAAGTAGATACAGGAGTCAGCGGCAGAGTTGCACAAGCAATCGCGGAGAAAATATAT
AAGGTTTCAACACATTCCCAAGTGTTTTGTATTTCTCATTTACCACAAGTTGCAGCAATGGCTGATACGCATTTATATAT
ATCTAAAAAGATTAAAAATGACAGAACGTATACGACTGTAACACCATTAGAAAATAGTGAAAAAGTAAAAGAAATTGGTC
GAATGATTTCTGGTGTAGAAATAACTGATTTAACAACAGAACATGCAAAAGAGCTACTTCAGCTTGCCGAAAAATTGAAA
AATAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60

100

0.614