Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   K6959_RS09700 Genome accession   NZ_CP082780
Coordinates   2030112..2030708 (+) Length   198 a.a.
NCBI ID   WP_223086374.1    Uniprot ID   -
Organism   Bacillus aquiflavi strain 3H-10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2025112..2035708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS09665 (K6959_09665) - 2025384..2026001 (-) 618 WP_223088355.1 SLOG family protein -
  K6959_RS09670 (K6959_09670) - 2026125..2026370 (-) 246 WP_163239962.1 spore coat protein -
  K6959_RS09675 (K6959_09675) - 2026637..2027104 (+) 468 WP_163239960.1 Hsp20/alpha crystallin family protein -
  K6959_RS09680 (K6959_09680) - 2027365..2027895 (-) 531 WP_262421762.1 YppG family protein -
  K6959_RS09685 (K6959_09685) - 2027965..2028336 (-) 372 WP_163239958.1 YppE family protein -
  K6959_RS09690 (K6959_09690) - 2028412..2028606 (-) 195 WP_163239956.1 hypothetical protein -
  K6959_RS09695 (K6959_09695) - 2029021..2029995 (-) 975 WP_163239954.1 DUF2515 family protein -
  K6959_RS09700 (K6959_09700) recU 2030112..2030708 (+) 597 WP_223086374.1 Holliday junction resolvase RecU Machinery gene
  K6959_RS09705 (K6959_09705) - 2030813..2033470 (+) 2658 WP_223086375.1 penicillin-binding protein 1A -
  K6959_RS09710 (K6959_09710) - 2033578..2033908 (-) 331 Protein_1964 transposase -
  K6959_RS09715 (K6959_09715) - 2034237..2034761 (-) 525 WP_163239948.1 YpoC family protein -
  K6959_RS09720 (K6959_09720) nth 2034745..2035413 (-) 669 WP_163239946.1 endonuclease III -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23222.87 Da        Isoelectric Point: 10.0868

>NTDB_id=602142 K6959_RS09700 WP_223086374.1 2030112..2030708(+) (recU) [Bacillus aquiflavi strain 3H-10]
MKIHYPNGQPYQVKRIQQSKGKKLIYGNRGMTLEEDLNEKNKFYLVNRIAVIHKKPTPVQIVDVDYPRRSAAVIKEAYFK
QPSTTDYNGVYKGKYLDFEAKETKSATSFPLKNFHEHQISHMKEVLFHGGISFVILRFSTTEEVFLLEAKDLFVFWNRMV
KGGRKSITKEEIAQFGYNIPLGFQPRIDYIKLINQLYY

Nucleotide


Download         Length: 597 bp        

>NTDB_id=602142 K6959_RS09700 WP_223086374.1 2030112..2030708(+) (recU) [Bacillus aquiflavi strain 3H-10]
ATGAAAATTCATTACCCAAACGGGCAGCCTTATCAAGTTAAAAGAATTCAACAATCTAAAGGGAAAAAGTTGATATACGG
TAATCGCGGCATGACTTTGGAAGAAGATTTAAATGAAAAAAATAAATTTTATTTAGTCAATCGCATTGCTGTCATTCATA
AAAAACCGACGCCTGTCCAAATTGTTGATGTTGATTATCCGCGAAGAAGTGCTGCTGTAATTAAGGAGGCATATTTTAAA
CAACCTTCAACAACAGACTATAACGGTGTTTACAAAGGAAAATATCTTGATTTTGAGGCAAAGGAAACGAAGAGTGCTAC
TTCATTTCCTTTAAAAAATTTCCATGAGCATCAAATAAGTCATATGAAGGAAGTACTCTTCCATGGGGGGATTTCTTTTG
TCATTTTACGCTTCTCCACAACTGAAGAAGTTTTTTTGCTGGAAGCAAAGGATTTATTTGTATTTTGGAATAGAATGGTC
AAAGGTGGAAGGAAATCAATTACAAAAGAAGAAATAGCTCAATTTGGATACAATATTCCTCTTGGATTTCAACCTAGAAT
CGACTATATTAAATTAATCAATCAACTTTACTATTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(29-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.819

100

0.641