Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K6959_RS07480 Genome accession   NZ_CP082780
Coordinates   1515669..1515944 (+) Length   91 a.a.
NCBI ID   WP_163240797.1    Uniprot ID   A0A6B3VUK0
Organism   Bacillus aquiflavi strain 3H-10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1510669..1520944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS07460 (K6959_07460) - 1511577..1512470 (+) 894 WP_223088061.1 hypothetical protein -
  K6959_RS07465 (K6959_07465) - 1512762..1513604 (+) 843 WP_223088062.1 ABC transporter ATP-binding protein -
  K6959_RS07470 (K6959_07470) - 1513537..1514289 (+) 753 WP_223088064.1 ABC transporter permease -
  K6959_RS07475 (K6959_07475) - 1514366..1515319 (+) 954 WP_374058345.1 aliphatic sulfonate ABC transporter substrate-binding protein -
  K6959_RS07480 (K6959_07480) abrB 1515669..1515944 (+) 276 WP_163240797.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K6959_RS07485 (K6959_07485) - 1516506..1516874 (+) 369 WP_163240799.1 hypothetical protein -
  K6959_RS07490 (K6959_07490) - 1516871..1518439 (+) 1569 WP_163240801.1 cation acetate symporter -
  K6959_RS07495 (K6959_07495) - 1518539..1519957 (-) 1419 WP_223088065.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10227.00 Da        Isoelectric Point: 6.3244

>NTDB_id=602141 K6959_RS07480 WP_163240797.1 1515669..1515944(+) (abrB) [Bacillus aquiflavi strain 3H-10]
MKPTGIVRKIDELGRIVIPVELRRSLSLEIKDPIEIFVDDDKIILRKYVVNNACDITGIISNDNVSLVNGKISLSREGAE
ILLKELQNIKN

Nucleotide


Download         Length: 276 bp        

>NTDB_id=602141 K6959_RS07480 WP_163240797.1 1515669..1515944(+) (abrB) [Bacillus aquiflavi strain 3H-10]
ATGAAACCAACAGGAATTGTACGAAAAATAGATGAATTAGGGAGAATTGTTATACCAGTTGAGTTGAGAAGAAGTTTGTC
ATTAGAAATTAAAGACCCGATTGAAATTTTTGTTGATGATGACAAAATTATTTTAAGAAAATATGTAGTTAATAATGCAT
GTGATATTACAGGTATCATTTCAAATGATAATGTTAGTTTAGTGAATGGAAAAATCTCTTTAAGTCGCGAAGGTGCTGAA
ATATTGTTAAAAGAGCTACAAAATATAAAAAATTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-48)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B3VUK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

60.227

96.703

0.582