Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   K6959_RS04930 Genome accession   NZ_CP082780
Coordinates   978570..979037 (-) Length   155 a.a.
NCBI ID   WP_246234810.1    Uniprot ID   -
Organism   Bacillus aquiflavi strain 3H-10     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 973570..984037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS04900 (K6959_04900) - 973605..973850 (+) 246 WP_223087799.1 hypothetical protein -
  K6959_RS04905 (K6959_04905) - 974050..975203 (+) 1154 WP_223087801.1 IS3 family transposase -
  K6959_RS04910 (K6959_04910) - 975563..976200 (+) 638 Protein_970 IS4 family transposase -
  K6959_RS04915 (K6959_04915) - 976311..977186 (+) 876 WP_223087802.1 NAD(P)-dependent oxidoreductase -
  K6959_RS04920 (K6959_04920) - 977286..977489 (-) 204 WP_223087803.1 hypothetical protein -
  K6959_RS04925 (K6959_04925) - 977757..978272 (+) 516 WP_223087805.1 RDD family protein -
  K6959_RS04930 (K6959_04930) kre 978570..979037 (-) 468 WP_246234810.1 YkyB family protein Regulator
  K6959_RS04935 (K6959_04935) - 979190..979690 (-) 501 WP_179959041.1 L,D-transpeptidase family protein -
  K6959_RS04940 (K6959_04940) - 980338..981222 (-) 885 WP_223087807.1 metallophosphoesterase -
  K6959_RS04945 (K6959_04945) fadH 981510..982274 (+) 765 WP_223087808.1 2,4-dienoyl-CoA reductase -
  K6959_RS04950 (K6959_04950) - 982316..983104 (-) 789 WP_163242774.1 C39 family peptidase -
  K6959_RS04955 (K6959_04955) - 983285..983515 (+) 231 WP_163242775.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 18151.08 Da        Isoelectric Point: 10.6680

>NTDB_id=602138 K6959_RS04930 WP_246234810.1 978570..979037(-) (kre) [Bacillus aquiflavi strain 3H-10]
MSHDKYESPLRSTVENLAQAIFTVNRHAKTAPNPKYLYRLKHEALKKLLKEGKAKKIGLHFSKNPKFSQQQSDVLVECGK
YSFHIPPSKQDFQTLPHLGKLNHLVRNPKTRLSLNEAKKMLELYTCLKEDKHHHTKNKHRQPQKPVFKRLGESYF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=602138 K6959_RS04930 WP_246234810.1 978570..979037(-) (kre) [Bacillus aquiflavi strain 3H-10]
TTGAGTCACGACAAATATGAATCTCCACTTCGATCAACAGTGGAAAACCTCGCACAGGCCATCTTCACCGTGAATCGTCA
CGCTAAAACCGCTCCAAACCCTAAATACTTATATAGACTAAAACATGAAGCACTAAAAAAATTATTAAAAGAAGGAAAAG
CAAAAAAAATTGGCCTCCACTTTTCCAAAAATCCAAAATTTAGTCAACAACAATCAGATGTTCTTGTTGAATGCGGAAAA
TACTCATTCCACATTCCTCCGTCTAAACAAGATTTCCAAACATTACCCCATCTCGGAAAACTTAATCATTTAGTGCGTAA
TCCAAAAACTCGACTTTCACTTAATGAAGCCAAGAAAATGTTGGAATTGTATACTTGTTTAAAAGAAGACAAGCATCATC
ATACAAAAAATAAGCACCGTCAGCCGCAGAAGCCTGTCTTCAAAAGACTTGGCGAAAGCTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

61.146

100

0.619