Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   K6959_RS04040 Genome accession   NZ_CP082780
Coordinates   796148..797113 (+) Length   321 a.a.
NCBI ID   WP_163240624.1    Uniprot ID   -
Organism   Bacillus aquiflavi strain 3H-10     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 791148..802113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS04020 (K6959_04020) clpB 791230..793833 (+) 2604 WP_163240632.1 ATP-dependent chaperone ClpB -
  K6959_RS04025 (K6959_04025) - 793998..794189 (-) 192 WP_163240630.1 DUF2929 family protein -
  K6959_RS04030 (K6959_04030) - 794372..795100 (+) 729 WP_163240628.1 hydrolase -
  K6959_RS04035 (K6959_04035) - 795174..796013 (+) 840 WP_163240626.1 hypothetical protein -
  K6959_RS04040 (K6959_04040) med 796148..797113 (+) 966 WP_163240624.1 BMP family ABC transporter substrate-binding protein Regulator
  K6959_RS04045 (K6959_04045) - 797141..797395 (-) 255 WP_163240622.1 hypothetical protein -
  K6959_RS04050 (K6959_04050) - 797692..798624 (+) 933 WP_163240620.1 beta-ketoacyl-ACP synthase III -
  K6959_RS04055 (K6959_04055) fabF 798671..799912 (+) 1242 WP_223087706.1 beta-ketoacyl-ACP synthase II -
  K6959_RS04060 (K6959_04060) - 800022..800813 (+) 792 WP_163240616.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35806.76 Da        Isoelectric Point: 5.3821

>NTDB_id=602133 K6959_RS04040 WP_163240624.1 796148..797113(+) (med) [Bacillus aquiflavi strain 3H-10]
MFKVLLRFGGIVVCLVLLASCGQSSSNGKLKKVGLLVPETINDQVWGTMGYKGMLKIQSKFHVDVYYKEGIHSLASVERA
IKEFNQKGVNLIFGHGNEFATYFNELANDYPHIHFVSFNGDADLPNTTSLNFEAYSMGFFGGMVAAHTTKTNKIGMIAAY
KWQPEIAGFLKGASFENQDVNVKIEYVNGWDDDEKALQLLKHLLDADVDVVYPAGDGFNVPIIETLKEKGLYAIGYVSDQ
SDLGESTVLISTVQHVDLLYELVAEKFNHGKLSSGTLTFDFQDGVISMGEYSPLIDEKFQKRLNEYIDNYKKTGKLPNEY
K

Nucleotide


Download         Length: 966 bp        

>NTDB_id=602133 K6959_RS04040 WP_163240624.1 796148..797113(+) (med) [Bacillus aquiflavi strain 3H-10]
ATGTTTAAAGTGTTGTTGCGTTTTGGGGGAATTGTTGTCTGCCTTGTTTTATTAGCTAGCTGCGGACAATCTAGTTCAAA
CGGAAAATTAAAAAAGGTTGGTCTGTTAGTTCCTGAAACGATAAATGATCAAGTGTGGGGAACAATGGGCTACAAAGGAA
TGCTGAAAATTCAATCGAAGTTTCATGTTGATGTATATTATAAAGAAGGAATACATTCTTTAGCAAGTGTAGAACGTGCC
ATAAAAGAATTTAATCAAAAAGGTGTAAATTTAATTTTTGGCCACGGAAATGAATTTGCAACATATTTTAACGAACTAGC
GAACGATTACCCCCATATACATTTTGTTAGTTTTAATGGAGATGCTGATCTCCCAAATACGACAAGTTTAAATTTTGAAG
CATATTCAATGGGCTTTTTCGGCGGAATGGTAGCAGCCCATACAACAAAAACGAATAAGATCGGGATGATTGCCGCCTAT
AAATGGCAGCCGGAAATTGCCGGCTTTTTAAAGGGGGCGTCCTTTGAAAATCAAGATGTGAATGTTAAAATTGAATATGT
TAACGGTTGGGATGATGATGAAAAGGCTTTACAACTACTTAAGCACCTTCTTGATGCAGATGTTGATGTTGTATATCCAG
CAGGAGACGGATTCAATGTTCCAATTATCGAGACGCTAAAGGAGAAAGGTTTATACGCCATTGGGTATGTGTCAGATCAA
TCTGATTTAGGAGAGTCTACAGTGCTTATTAGTACAGTTCAGCATGTTGATCTTCTTTATGAGCTTGTAGCAGAAAAGTT
TAATCATGGTAAATTATCTAGTGGAACTTTAACTTTTGATTTTCAAGACGGAGTTATTTCGATGGGAGAATATAGCCCAT
TAATAGATGAAAAATTTCAAAAAAGATTGAACGAATATATAGACAATTATAAAAAAACAGGCAAGCTACCAAATGAATAT
AAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

53.185

97.819

0.52