Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   JSY00_RS08610 Genome accession   NZ_CP082778
Coordinates   1756392..1757126 (-) Length   244 a.a.
NCBI ID   WP_202847537.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32098     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751392..1762126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSY00_RS08580 (JSY00_08580) rnpM 1751580..1751876 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  JSY00_RS08585 (JSY00_08585) nusA 1751893..1753035 (-) 1143 WP_014638606.1 transcription termination factor NusA -
  JSY00_RS08590 (JSY00_08590) rimP 1753108..1753578 (-) 471 WP_172005101.1 ribosome maturation factor RimP -
  JSY00_RS08595 (JSY00_08595) trmB 1753876..1754514 (-) 639 WP_024406557.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  JSY00_RS08600 (JSY00_08600) ccrZ 1754511..1755305 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  JSY00_RS08605 (JSY00_08605) - 1755355..1756395 (-) 1041 WP_202847536.1 ABC transporter permease -
  JSY00_RS08610 (JSY00_08610) pptA 1756392..1757126 (-) 735 WP_202847537.1 ABC transporter ATP-binding protein Regulator
  JSY00_RS08615 (JSY00_08615) - 1757189..1757602 (+) 414 WP_024385169.1 HIT family protein -
  JSY00_RS08620 (JSY00_08620) - 1757604..1757906 (+) 303 WP_015647347.1 hypothetical protein -
  JSY00_RS08625 (JSY00_08625) - 1758016..1759209 (-) 1194 WP_044668818.1 LCP family protein -
  JSY00_RS08630 (JSY00_08630) - 1759206..1759733 (-) 528 WP_202847538.1 GNAT family N-acetyltransferase -
  JSY00_RS08635 (JSY00_08635) tsaE 1759726..1760166 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  JSY00_RS08640 (JSY00_08640) - 1760267..1761931 (-) 1665 WP_202847539.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26804.05 Da        Isoelectric Point: 4.3606

>NTDB_id=602119 JSY00_RS08610 WP_202847537.1 1756392..1757126(-) (pptA) [Streptococcus suis strain ID32098]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVAAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=602119 JSY00_RS08610 WP_202847537.1 1756392..1757126(-) (pptA) [Streptococcus suis strain ID32098]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACAACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGGCAGATTGCAATTGACGGCCTAACTTTGCTGCAAGGGGCTGAAAATTATCGGAAGAAGATTGGATTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGCAGCAATGGCCTATGATTTATCTTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCCGTGGCTATCTCTGACTTGATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717