Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JSY00_RS07135 Genome accession   NZ_CP082778
Coordinates   1450246..1451049 (-) Length   267 a.a.
NCBI ID   WP_024407014.1    Uniprot ID   A0A123TQ59
Organism   Streptococcus suis strain ID32098     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1445246..1456049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSY00_RS07120 (JSY00_07120) recR 1445602..1446198 (-) 597 WP_024399909.1 recombination mediator RecR -
  JSY00_RS07125 (JSY00_07125) pbp2b 1446207..1448276 (-) 2070 WP_014637681.1 penicillin-binding protein PBP2B -
  JSY00_RS07130 (JSY00_07130) vga(F) 1448368..1449753 (-) 1386 WP_202847633.1 ABC-F type ribosomal protection protein Vga(F) -
  JSY00_RS07135 (JSY00_07135) vicX 1450246..1451049 (-) 804 WP_024407014.1 MBL fold metallo-hydrolase Regulator
  JSY00_RS07140 (JSY00_07140) micB 1451056..1452405 (-) 1350 WP_029180103.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JSY00_RS07145 (JSY00_07145) micA 1452398..1453102 (-) 705 WP_002935840.1 response regulator YycF Regulator
  JSY00_RS07150 (JSY00_07150) - 1453296..1454057 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  JSY00_RS07155 (JSY00_07155) - 1454068..1454907 (+) 840 WP_202847632.1 transporter substrate-binding domain-containing protein -
  JSY00_RS07160 (JSY00_07160) - 1454922..1455620 (+) 699 WP_013730248.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29633.71 Da        Isoelectric Point: 5.7755

>NTDB_id=602109 JSY00_RS07135 WP_024407014.1 1450246..1451049(-) (vicX) [Streptococcus suis strain ID32098]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATALTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=602109 JSY00_RS07135 WP_024407014.1 1450246..1451049(-) (vicX) [Streptococcus suis strain ID32098]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATCTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCATATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGCCATCTTTGTAACGAAGACGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGTCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTAGATTTCCAAGTCTATGATACATCGCCAGATACAGCGACTGCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A123TQ59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768