Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JSY00_RS06800 Genome accession   NZ_CP082778
Coordinates   1380526..1382328 (-) Length   600 a.a.
NCBI ID   WP_202847644.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32098     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375526..1387328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSY00_RS06775 (JSY00_06775) - 1376967..1377452 (-) 486 WP_044668712.1 LURP-one-related/scramblase family protein -
  JSY00_RS06780 (JSY00_06780) prsA 1377661..1378662 (-) 1002 WP_044668710.1 peptidylprolyl isomerase PrsA -
  JSY00_RS06785 (JSY00_06785) - 1378725..1379444 (-) 720 WP_043034995.1 O-methyltransferase -
  JSY00_RS06790 (JSY00_06790) - 1379519..1380067 (-) 549 WP_024384845.1 DUF6630 family protein -
  JSY00_RS06795 (JSY00_06795) - 1380078..1380524 (-) 447 WP_044673787.1 hypothetical protein -
  JSY00_RS06800 (JSY00_06800) pepF 1380526..1382328 (-) 1803 WP_202847644.1 oligoendopeptidase F Regulator
  JSY00_RS06805 (JSY00_06805) coiA 1382557..1383498 (-) 942 WP_202847643.1 competence protein CoiA Machinery gene
  JSY00_RS06810 (JSY00_06810) - 1383560..1384126 (+) 567 WP_136581418.1 GNAT family N-acetyltransferase -
  JSY00_RS06815 (JSY00_06815) metG 1384155..1386158 (-) 2004 WP_202847642.1 methionine--tRNA ligase -
  JSY00_RS06820 (JSY00_06820) - 1386366..1387115 (-) 750 WP_202847641.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69162.28 Da        Isoelectric Point: 4.5553

>NTDB_id=602105 JSY00_RS06800 WP_202847644.1 1380526..1382328(-) (pepF) [Streptococcus suis strain ID32098]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKAKDFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKATGLYSAFSQAFAFYEPEFMAITEEQLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFEAPSETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALSANFIPESVYDTLVSAVNKHLPLLHRYINMRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEEYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=602105 JSY00_RS06800 WP_202847644.1 1380526..1382328(-) (pepF) [Streptococcus suis strain ID32098]
ATGTCTAAACAACGTTATGAAATTGAAGAAAAATACCAGTGGGATTTGACTACTATTTTCCCAACAGATGAGGCTTGGGA
AGCCGAATTGGCTGATTTGCAAGCAGAAACAGAAAAGGCAAAGGACTTTGCTGGTCACTTGCTAGACTCAGCGAAGAGCC
TTTTGGAAATCAGTGAAACGCAACTCGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAAAACGAC
CAAGATACTCGCGAAGGAAAGTATCAGGAATTTCAAGCTAAGGCTACGGGGCTTTATTCTGCCTTTTCACAGGCCTTTGC
TTTCTATGAGCCAGAATTTATGGCCATTACTGAAGAGCAGTTGGAAGCCTTCAAAGTAGAAGAGCCAGCTCTTGTTCAGT
ACAGCCATCAATTTGAAAAACTTTTAGCGGCTAAAGACCATGTCCTGTCACAAGAGGTGGAAGAAGTATTGGCAGCGACC
AGCGAGATTTTTGAAGCACCATCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTCCAGTCTAACGTTAAGGTTAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCAGCCCTTTCTGCCAACTTTATCCCAGAGTCCGTTTA
CGATACATTAGTATCAGCAGTCAACAAGCACCTCCCGCTCTTGCACCGTTATATCAATATGCGTAAGAAACTCTTGGGTA
TTGATGATCTTAAGATGTACGATATGTACACACCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCTCTCAAA
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGAGTATTCGGCTATTGTAAAAGAAGCCTTTGAAAACCGCTGGATTGA
CGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGCCACTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCTTATGTCTATGGACATTATTCCCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTCAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAGCAAGCGATTTACAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTATGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGATAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70

100

0.7