Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   JSY00_RS01125 Genome accession   NZ_CP082778
Coordinates   206091..206804 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain ID32098     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 201091..211804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSY00_RS01115 (JSY00_01115) treC 202160..203785 (-) 1626 WP_202847600.1 alpha,alpha-phosphotrehalase -
  JSY00_RS01120 (JSY00_01120) treP 203866..205860 (-) 1995 WP_202847601.1 PTS system trehalose-specific EIIBC component -
  JSY00_RS01125 (JSY00_01125) treR 206091..206804 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  JSY00_RS01130 (JSY00_01130) - 206862..207173 (+) 312 WP_002935948.1 hypothetical protein -
  JSY00_RS01135 (JSY00_01135) - 207170..207718 (+) 549 WP_002935945.1 CvpA family protein -
  JSY00_RS01140 (JSY00_01140) - 208213..210546 (+) 2334 WP_202847602.1 endonuclease MutS2 -
  JSY00_RS01145 (JSY00_01145) - 210569..211222 (+) 654 WP_202847603.1 GNAT family N-acetyltransferase -
  JSY00_RS01150 (JSY00_01150) - 211327..211704 (+) 378 WP_029749883.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=602091 JSY00_RS01125 WP_012774930.1 206091..206804(+) (treR) [Streptococcus suis strain ID32098]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=602091 JSY00_RS01125 WP_012774930.1 206091..206804(+) (treR) [Streptococcus suis strain ID32098]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAGAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515