Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LPT22_RS12175 Genome accession   NZ_CP099506
Coordinates   2446775..2447575 (+) Length   266 a.a.
NCBI ID   WP_001807805.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0316-H-5A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2441775..2452575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT22_RS12160 (LPT22_12160) walK 2442445..2444271 (+) 1827 WP_000871607.1 cell wall metabolism sensor histidine kinase WalK -
  LPT22_RS12165 (LPT22_12165) yycH 2444264..2445598 (+) 1335 WP_001060144.1 two-component system activity regulator YycH -
  LPT22_RS12170 (LPT22_12170) yycI 2445599..2446387 (+) 789 WP_001104170.1 two-component system regulatory protein YycI -
  LPT22_RS12175 (LPT22_12175) vicX 2446775..2447575 (+) 801 WP_001807805.1 MBL fold metallo-hydrolase Regulator
  LPT22_RS12180 (LPT22_12180) adsA 2447802..2450123 (+) 2322 WP_000645765.1 LPXTG-anchored adenosine synthase AdsA -
  LPT22_RS12185 (LPT22_12185) rlmH 2450489..2450968 (+) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30313.56 Da        Isoelectric Point: 6.5000

>NTDB_id=602040 LPT22_RS12175 WP_001807805.1 2446775..2447575(+) (vicX) [Staphylococcus aureus strain 0316-H-5A]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIKDLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPMDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMTDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
EHDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=602040 LPT22_RS12175 WP_001807805.1 2446775..2447575(+) (vicX) [Staphylococcus aureus strain 0316-H-5A]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TCTATTAGTTGATGTTGGTTTGACTGGCAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTAAAGATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATTCCTATGGATCAGAAATTTATTTTTAATCC
TTATGAAACGAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAACGTGTCACATGATGCGATAGATCCGCAATTTTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTAACGGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAGAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGGTCATGCGATGACAGACGTGATTACAGGTAACACGA
AACGTATTTACTTATCGCATTTATCACAAGATAATAACATGAAAGATTTGGCGCGTATGAGTGTTGGCCAAGTATTGAAC
GAACACGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

49.027

96.617

0.474