Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K8B92_RS08525 Genome accession   NZ_CP082776
Coordinates   1792931..1793560 (+) Length   209 a.a.
NCBI ID   WP_000839144.1    Uniprot ID   -
Organism   Escherichia coli O4:H5 strain CU532-9     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1787931..1798560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B92_RS08505 (K8B92_08475) ycbZ 1788331..1790091 (-) 1761 WP_000156501.1 Lon protease family protein -
  K8B92_RS08510 (K8B92_08480) matP 1790277..1790729 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K8B92_RS08515 (K8B92_08485) ompA 1790807..1791847 (-) 1041 WP_001350588.1 porin OmpA -
  K8B92_RS08520 (K8B92_08490) sulA 1792203..1792712 (-) 510 WP_000288694.1 SOS-induced cell division inhibitor SulA -
  K8B92_RS08525 (K8B92_08495) sxy/tfoX 1792931..1793560 (+) 630 WP_000839144.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K8B92_RS08530 (K8B92_08500) yccS 1793523..1795685 (-) 2163 WP_000875041.1 YccS family putative transporter -
  K8B92_RS08535 (K8B92_08505) yccF 1795695..1796141 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K8B92_RS08540 (K8B92_08510) helD 1796264..1798318 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24159.07 Da        Isoelectric Point: 9.2180

>NTDB_id=602037 K8B92_RS08525 WP_000839144.1 1792931..1793560(+) (sxy/tfoX) [Escherichia coli O4:H5 strain CU532-9]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=602037 K8B92_RS08525 WP_000839144.1 1792931..1793560(+) (sxy/tfoX) [Escherichia coli O4:H5 strain CU532-9]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995