Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K8B88_RS08920 Genome accession   NZ_CP082774
Coordinates   1880357..1880986 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O16:H6 strain CU37RT-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1875357..1885986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B88_RS08900 (K8B88_08875) ycbZ 1875758..1877518 (-) 1761 WP_000156501.1 Lon protease family protein -
  K8B88_RS08905 (K8B88_08880) matP 1877704..1878156 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K8B88_RS08910 (K8B88_08885) ompA 1878234..1879274 (-) 1041 WP_001682780.1 porin OmpA -
  K8B88_RS08915 (K8B88_08890) sulA 1879630..1880139 (-) 510 WP_021523910.1 SOS-induced cell division inhibitor SulA -
  K8B88_RS08920 (K8B88_08895) sxy/tfoX 1880357..1880986 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K8B88_RS08925 (K8B88_08900) yccS 1880949..1883111 (-) 2163 WP_072251684.1 YccS family putative transporter -
  K8B88_RS08930 (K8B88_08905) yccF 1883121..1883567 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K8B88_RS08935 (K8B88_08910) helD 1883690..1885744 (+) 2055 WP_021523911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=601991 K8B88_RS08920 WP_000839153.1 1880357..1880986(+) (sxy/tfoX) [Escherichia coli O16:H6 strain CU37RT-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=601991 K8B88_RS08920 WP_000839153.1 1880357..1880986(+) (sxy/tfoX) [Escherichia coli O16:H6 strain CU37RT-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACTTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1