Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K8B93_RS08945 Genome accession   NZ_CP082772
Coordinates   1916763..1917392 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli O2:H1 strain HM670     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1911763..1922392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B93_RS08925 (K8B93_08910) ycbZ 1912151..1913911 (-) 1761 WP_000156504.1 Lon protease family protein -
  K8B93_RS08930 (K8B93_08915) matP 1914097..1914549 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K8B93_RS08935 (K8B93_08920) ompA 1914628..1915680 (-) 1053 WP_001528868.1 porin OmpA -
  K8B93_RS08940 (K8B93_08925) sulA 1916035..1916544 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  K8B93_RS08945 (K8B93_08930) sxy/tfoX 1916763..1917392 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K8B93_RS08950 (K8B93_08935) yccS 1917355..1919517 (-) 2163 WP_000875041.1 YccS family putative transporter -
  K8B93_RS08955 (K8B93_08940) yccF 1919527..1919973 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K8B93_RS08960 (K8B93_08945) helD 1920096..1922150 (+) 2055 WP_001443200.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=601945 K8B93_RS08945 WP_000839136.1 1916763..1917392(+) (sxy/tfoX) [Escherichia coli O2:H1 strain HM670]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=601945 K8B93_RS08945 WP_000839136.1 1916763..1917392(+) (sxy/tfoX) [Escherichia coli O2:H1 strain HM670]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99