Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LPT20_RS03720 Genome accession   NZ_CP099504
Coordinates   780432..781403 (-) Length   323 a.a.
NCBI ID   WP_000876317.1    Uniprot ID   -
Organism   Staphylococcus aureus strain S36     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 775432..786403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT20_RS03695 (LPT20_03695) murB 776012..776935 (+) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -
  LPT20_RS03700 (LPT20_03700) - 776953..777267 (+) 315 WP_001127269.1 CHY zinc finger protein -
  LPT20_RS03705 (LPT20_03705) - 777584..778612 (-) 1029 WP_000754461.1 siderophore ABC transporter substrate-binding protein -
  LPT20_RS03710 (LPT20_03710) - 778731..779492 (-) 762 WP_000616873.1 ABC transporter ATP-binding protein -
  LPT20_RS03715 (LPT20_03715) - 779489..780445 (-) 957 WP_001245572.1 iron chelate uptake ABC transporter family permease subunit -
  LPT20_RS03720 (LPT20_03720) ceuB 780432..781403 (-) 972 WP_000876317.1 ABC transporter permease Machinery gene
  LPT20_RS03725 (LPT20_03725) - 781442..781597 (-) 156 WP_000499195.1 hypothetical protein -
  LPT20_RS03730 (LPT20_03730) nrdF 782097..783068 (-) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  LPT20_RS03735 (LPT20_03735) nrdE 783186..785291 (-) 2106 WP_000855509.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  LPT20_RS03740 (LPT20_03740) nrdI 785254..785652 (-) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35654.19 Da        Isoelectric Point: 10.0154

>NTDB_id=601895 LPT20_RS03720 WP_000876317.1 780432..781403(-) (ceuB) [Staphylococcus aureus strain S36]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMEGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=601895 LPT20_RS03720 WP_000876317.1 780432..781403(-) (ceuB) [Staphylococcus aureus strain S36]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTTATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTGCCGCTTTTAGGAATTATGATGGAGGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTAGTAGTAGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.188

99.071

0.467