Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LPT20_RS03635 Genome accession   NZ_CP099504
Coordinates   763736..764818 (-) Length   360 a.a.
NCBI ID   WP_000370986.1    Uniprot ID   -
Organism   Staphylococcus aureus strain S36     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758736..769818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT20_RS03615 (LPT20_03615) - 759345..759443 (-) 99 WP_031844945.1 hypothetical protein -
  LPT20_RS03620 (LPT20_03620) secA 759485..762022 (-) 2538 WP_000506542.1 preprotein translocase subunit SecA -
  LPT20_RS03625 (LPT20_03625) raiA 762436..763008 (-) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  LPT20_RS03630 (LPT20_03630) - 763069..763743 (-) 675 WP_001057968.1 ComF family protein -
  LPT20_RS03635 (LPT20_03635) comFA 763736..764818 (-) 1083 WP_000370986.1 DEAD/DEAH box helicase Machinery gene
  LPT20_RS03640 (LPT20_03640) fakB1 765182..766048 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  LPT20_RS03645 (LPT20_03645) - 766192..766833 (+) 642 WP_000192947.1 YigZ family protein -
  LPT20_RS03650 (LPT20_03650) - 767005..768060 (-) 1056 WP_000258151.1 MraY family glycosyltransferase -
  LPT20_RS03655 (LPT20_03655) - 768378..769448 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42055.60 Da        Isoelectric Point: 9.8309

>NTDB_id=601894 LPT20_RS03635 WP_000370986.1 763736..764818(-) (comFA) [Staphylococcus aureus strain S36]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKHAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=601894 LPT20_RS03635 WP_000370986.1 763736..764818(-) (comFA) [Staphylococcus aureus strain S36]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGCTCGCAAAGTTCATCGCAAGCATATTATCATCTCTCATTTGAATT
GTCAGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAACACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTTTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367