Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K7T73_RS16865 Genome accession   NZ_CP082363
Coordinates   3212450..3213400 (-) Length   316 a.a.
NCBI ID   WP_223662061.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3207450..3218400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS16835 (K7T73_16810) - 3208294..3208449 (-) 156 WP_065849525.1 DUF1540 domain-containing protein -
  K7T73_RS16840 (K7T73_16815) - 3208558..3208722 (-) 165 WP_065849524.1 DUF1540 domain-containing protein -
  K7T73_RS16845 (K7T73_16820) - 3208746..3209570 (-) 825 WP_063384808.1 manganese catalase family protein -
  K7T73_RS16850 (K7T73_16825) - 3209780..3210736 (-) 957 WP_063384807.1 siderophore ABC transporter substrate-binding protein -
  K7T73_RS16855 (K7T73_16830) - 3210755..3211513 (-) 759 WP_041094711.1 ABC transporter ATP-binding protein -
  K7T73_RS16860 (K7T73_16835) - 3211507..3212457 (-) 951 WP_063384806.1 iron chelate uptake ABC transporter family permease subunit -
  K7T73_RS16865 (K7T73_16840) ceuB 3212450..3213400 (-) 951 WP_223662061.1 ABC transporter permease Machinery gene
  K7T73_RS16870 (K7T73_16845) - 3213842..3214357 (-) 516 WP_063384805.1 DUF3231 family protein -
  K7T73_RS16875 (K7T73_16850) - 3214520..3216670 (+) 2151 WP_223662062.1 MMPL family transporter -
  K7T73_RS16880 (K7T73_16855) - 3216736..3217953 (-) 1218 WP_063384803.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34879.06 Da        Isoelectric Point: 9.8534

>NTDB_id=601834 K7T73_RS16865 WP_223662061.1 3212450..3213400(-) (ceuB) [Bacillus badius strain NBPM-293]
MKKRYLVMALIVLSIGSLFIGVTHISPLHLFNLTDDQTQIVWKSRIPRLVSIIIAGMSLSISGLIMQQLSRNRFVSPTTA
GTLDSARLGILVSLILFTAASPIEKMVVAFLFALAGTFLFMKILDKIKFKDTVFIPLVGLMFGNILTSIATFFAYKYDLI
QNMAAWLQGDFSMVISGRYELLYISIPLLVIAYIYAERFTLAGMGEDFAMNLGLNYKSVVNIGLVIVALSATLVVLTVGM
IPFLGLIIPNIVSIYQGDHLKKSLSHTALLGAVFVLFCDIIGRVIIYPYEIPIGLTVGVIGSGIFLYLLMRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=601834 K7T73_RS16865 WP_223662061.1 3212450..3213400(-) (ceuB) [Bacillus badius strain NBPM-293]
ATGAAAAAAAGATACTTAGTGATGGCGCTGATCGTTTTGTCCATTGGTTCTTTATTTATTGGAGTGACGCATATTTCTCC
GCTTCATTTATTTAATCTGACAGATGATCAAACGCAGATTGTATGGAAGAGCCGGATTCCGCGCCTTGTCAGCATTATTA
TTGCCGGAATGAGCCTGAGCATCAGCGGTCTGATCATGCAGCAATTAAGCAGAAACCGGTTTGTTTCACCGACTACAGCA
GGAACACTTGATTCCGCCCGGCTTGGGATTTTAGTCTCGCTTATTTTATTTACAGCCGCAAGCCCAATTGAAAAGATGGT
GGTTGCATTCCTTTTTGCACTGGCCGGCACCTTTTTATTTATGAAAATCCTGGATAAGATCAAATTTAAAGATACGGTGT
TTATTCCGCTTGTTGGATTAATGTTCGGGAATATTTTAACATCGATTGCTACTTTCTTTGCTTATAAATATGATTTGATC
CAGAATATGGCCGCCTGGCTGCAAGGGGATTTCTCCATGGTGATCTCTGGACGATACGAATTGCTTTATATTAGTATTCC
GCTTTTAGTCATTGCATACATATATGCGGAACGCTTTACCTTGGCCGGCATGGGGGAGGATTTCGCCATGAATCTCGGCT
TAAATTATAAGAGTGTCGTCAATATTGGCCTCGTTATCGTAGCCTTGTCCGCTACATTAGTCGTATTAACGGTCGGCATG
ATTCCTTTCTTAGGATTAATCATTCCGAATATCGTTTCGATTTACCAGGGAGACCATTTGAAAAAGAGTTTATCCCACAC
CGCGCTGCTTGGAGCAGTTTTTGTTCTGTTTTGCGACATCATCGGCCGTGTGATCATTTATCCATATGAGATTCCGATCG
GACTGACTGTCGGGGTCATCGGCAGCGGCATCTTTTTATATTTGCTGATGAGGAGAAAGGCGTATGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

99.051

0.528