Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K7T73_RS13415 Genome accession   NZ_CP082363
Coordinates   2560286..2561062 (-) Length   258 a.a.
NCBI ID   WP_063385539.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2555286..2566062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS13400 (K7T73_13380) - 2556108..2556743 (-) 636 WP_041097289.1 helix-turn-helix transcriptional regulator -
  K7T73_RS13405 (K7T73_13385) glyS 2556963..2559035 (-) 2073 WP_063385540.1 glycine--tRNA ligase subunit beta -
  K7T73_RS13410 (K7T73_13390) glyQ 2559028..2559918 (-) 891 WP_041097293.1 glycine--tRNA ligase subunit alpha -
  K7T73_RS13415 (K7T73_13395) recO 2560286..2561062 (-) 777 WP_063385539.1 DNA repair protein RecO Machinery gene
  K7T73_RS13420 (K7T73_13400) - 2561087..2561242 (-) 156 WP_065849526.1 YqzL family protein -
  K7T73_RS13425 (K7T73_13405) era 2561353..2562273 (-) 921 WP_041097297.1 GTPase Era -
  K7T73_RS13430 (K7T73_13410) - 2562266..2562664 (-) 399 WP_063385537.1 cytidine deaminase -
  K7T73_RS13435 (K7T73_13415) - 2562754..2563143 (-) 390 WP_276204924.1 diacylglycerol kinase family protein -
  K7T73_RS13440 (K7T73_13420) ybeY 2563121..2563594 (-) 474 WP_223661848.1 rRNA maturation RNase YbeY -
  K7T73_RS13445 (K7T73_13425) - 2563767..2564729 (-) 963 WP_041097306.1 PhoH family protein -
  K7T73_RS13450 (K7T73_13430) yqfD 2564680..2565921 (-) 1242 WP_041113271.1 sporulation protein YqfD -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29825.41 Da        Isoelectric Point: 7.0844

>NTDB_id=601826 K7T73_RS13415 WP_063385539.1 2560286..2561062(-) (recO) [Bacillus badius strain NBPM-293]
MLQKIEGIVIRTSDYGETNKVVTIYTREKGKLAFMARGAKKPNSRLSSVTQPFTHGSFLVQSGSGLGTLQQGEMMTSMRH
IREDLLMSAHAAYMAELLDKSTEEKKPNPYLYELFEQCLHYLNEGYDAEVITAIFEMKMLQVIGLHPELSGCAHCGSREG
RFAFSIRENGFLCHRCFEVDPYLLPLSQAAIKLLRLFYFFDLKRLGDIKVKEETKKELRTAISLYYDEYSGIYLKSRRFL
DQMERMQSFLMNKEQEED

Nucleotide


Download         Length: 777 bp        

>NTDB_id=601826 K7T73_RS13415 WP_063385539.1 2560286..2561062(-) (recO) [Bacillus badius strain NBPM-293]
ATGCTTCAAAAGATTGAAGGGATTGTAATTCGAACATCCGATTATGGAGAAACTAATAAAGTTGTAACCATTTACACACG
GGAGAAGGGCAAGCTCGCTTTTATGGCGCGTGGAGCAAAGAAGCCCAACAGCCGCCTTTCTTCCGTCACCCAGCCGTTTA
CACATGGAAGCTTTCTTGTTCAGTCCGGCAGCGGTCTCGGTACATTGCAGCAGGGGGAAATGATGACATCCATGCGCCAT
ATCCGGGAAGATTTGCTTATGTCTGCACATGCGGCCTACATGGCCGAACTGCTTGACAAAAGCACAGAAGAAAAAAAGCC
GAATCCATATTTATATGAGCTTTTTGAGCAATGTCTTCATTACTTGAACGAGGGGTATGACGCAGAAGTTATCACAGCCA
TTTTTGAAATGAAAATGCTGCAGGTGATCGGCTTGCACCCGGAGCTGTCCGGCTGTGCTCATTGCGGGAGCCGGGAAGGC
CGTTTTGCCTTTTCCATTCGGGAAAACGGCTTTTTATGCCATCGCTGCTTTGAAGTAGATCCATATTTGCTGCCGTTATC
ACAAGCTGCAATTAAACTGTTGCGGCTGTTTTATTTTTTCGATCTGAAAAGACTGGGCGATATCAAGGTGAAGGAAGAGA
CAAAAAAAGAATTGCGGACGGCGATTTCTCTCTACTACGATGAGTATTCCGGCATTTATTTAAAATCGCGCAGGTTTCTT
GACCAGATGGAGAGAATGCAGTCTTTTCTTATGAATAAAGAGCAAGAAGAGGATTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

65.6

96.899

0.636