Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   K7T73_RS12355 Genome accession   NZ_CP082363
Coordinates   2418650..2419108 (-) Length   152 a.a.
NCBI ID   WP_349774397.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2413650..2424108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS12315 (K7T73_12300) - 2414715..2415488 (+) 774 WP_063385567.1 YqhG family protein -
  K7T73_RS12320 (K7T73_12305) - 2415548..2415718 (-) 171 WP_082821802.1 YqzE family protein -
  K7T73_RS12325 (K7T73_12310) - 2415779..2416159 (-) 381 WP_223661683.1 hypothetical protein -
  K7T73_RS12330 (K7T73_12315) comGF 2416156..2416650 (-) 495 WP_223661684.1 competence type IV pilus minor pilin ComGF -
  K7T73_RS12335 (K7T73_12320) - 2416571..2416879 (-) 309 WP_041097214.1 type II secretion system protein -
  K7T73_RS12340 (K7T73_12325) comGD 2416863..2417324 (-) 462 WP_063385564.1 competence type IV pilus minor pilin ComGD -
  K7T73_RS12345 (K7T73_12330) comGC 2417314..2417637 (-) 324 WP_041097219.1 competence type IV pilus major pilin ComGC -
  K7T73_RS12350 (K7T73_12335) comGB 2417656..2418699 (-) 1044 WP_041097221.1 competence type IV pilus assembly protein ComGB -
  K7T73_RS12355 comGA 2418650..2419108 (-) 459 WP_349774397.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  K7T73_RS12360 (K7T73_12345) - 2419335..2419967 (-) 633 WP_223661685.1 replication-relaxation family protein -
  K7T73_RS12365 (K7T73_12350) - 2419906..2421150 (-) 1245 WP_223661686.1 FtsK/SpoIIIE domain-containing protein -
  K7T73_RS12370 (K7T73_12355) - 2421505..2421879 (-) 375 WP_223661687.1 hypothetical protein -
  K7T73_RS12375 (K7T73_12360) - 2422008..2422217 (+) 210 WP_223661688.1 helix-turn-helix transcriptional regulator -
  K7T73_RS12380 (K7T73_12365) - 2422231..2423040 (-) 810 WP_223661689.1 GH25 family lysozyme -
  K7T73_RS12385 (K7T73_12370) - 2423045..2423323 (-) 279 WP_223661690.1 phage holin -
  K7T73_RS12390 (K7T73_12375) - 2423337..2423750 (-) 414 WP_223661691.1 hypothetical protein -
  K7T73_RS21940 - 2423844..2423954 (-) 111 WP_263300270.1 CD1375 family protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17116.96 Da        Isoelectric Point: 9.4564

>NTDB_id=601825 K7T73_RS12355 WP_349774397.1 2418650..2419108(-) (comGA) [Bacillus badius strain NBPM-293]
MIMVGEIRDEETARIAIRAALTGHLVLTTLHTRDAKGAVIRLLEFGLKWHEIEQTLIAVTAQRLVNLLCPACGAACSSRC
LSEKQRKQATIYEILSGSNLKAVLNEAKGEKSFYRYPLLKHLLGKGIALGYLSQSEYDRWVFEEEKSRKISR

Nucleotide


Download         Length: 459 bp        

>NTDB_id=601825 K7T73_RS12355 WP_349774397.1 2418650..2419108(-) (comGA) [Bacillus badius strain NBPM-293]
GTGATTATGGTCGGGGAAATCCGCGATGAAGAAACGGCAAGGATAGCCATTCGAGCCGCCTTAACAGGGCATCTGGTTTT
AACGACATTGCATACGCGTGACGCCAAAGGAGCCGTCATTCGCCTGCTGGAATTCGGCTTAAAGTGGCATGAGATTGAGC
AAACCTTAATCGCCGTAACGGCCCAGCGTCTTGTCAATCTGTTATGTCCGGCGTGCGGGGCAGCTTGTTCTTCCCGCTGT
CTGTCAGAGAAGCAGCGCAAACAGGCGACTATTTATGAAATCTTAAGCGGGTCTAATTTAAAGGCGGTATTAAATGAAGC
AAAAGGAGAAAAGAGCTTCTATCGCTATCCGCTGTTAAAACATTTATTAGGAAAGGGGATTGCCCTTGGGTATCTCTCTC
AAAGCGAATATGATCGCTGGGTATTTGAAGAAGAGAAGAGCAGGAAAATATCAAGGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(1-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.219

96.053

0.559