Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   K7T73_RS11425 Genome accession   NZ_CP082363
Coordinates   2244688..2245293 (+) Length   201 a.a.
NCBI ID   WP_223661636.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2239688..2250293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS11405 (K7T73_11390) - 2240700..2242967 (-) 2268 WP_223661635.1 DEAD/DEAH box helicase -
  K7T73_RS11410 (K7T73_11395) - 2243082..2243447 (-) 366 WP_063385679.1 YppG family protein -
  K7T73_RS11415 (K7T73_11400) - 2243509..2243862 (-) 354 WP_041096887.1 DUF1798 family protein -
  K7T73_RS11420 (K7T73_11405) - 2244072..2244293 (-) 222 WP_063385678.1 hypothetical protein -
  K7T73_RS11425 (K7T73_11410) recU 2244688..2245293 (+) 606 WP_223661636.1 Holliday junction resolvase RecU Machinery gene
  K7T73_RS11430 (K7T73_11415) - 2245347..2248136 (+) 2790 WP_223661637.1 transglycosylase domain-containing protein -
  K7T73_RS11435 (K7T73_11420) - 2248179..2248673 (-) 495 WP_223661638.1 YpoC family protein -
  K7T73_RS11440 (K7T73_11425) nth 2248670..2249323 (-) 654 WP_063385675.1 endonuclease III -
  K7T73_RS11445 (K7T73_11430) - 2249338..2250027 (-) 690 WP_041096897.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23222.50 Da        Isoelectric Point: 9.7466

>NTDB_id=601822 K7T73_RS11425 WP_223661636.1 2244688..2245293(+) (recU) [Bacillus badius strain NBPM-293]
MTIRYPNGKKYVADTKAAAMKQTPLRDSYSNRGMTLEEDLNETNTFYLERGLAVIHKKPTPVQIVQVDYPRRSAAVIKEA
YFKQASTTDYNGVYRGKYVDFEAKETRNATSFPLKNFHKHQIAHMENVEKQEGISFVIIRFTLTEEIFYLPASRLFDFWS
RMENGGRKSITKAEIESSGFSIPTGLHPRIPYLSVIDKLYF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=601822 K7T73_RS11425 WP_223661636.1 2244688..2245293(+) (recU) [Bacillus badius strain NBPM-293]
ATGACAATAAGATATCCGAACGGAAAGAAATATGTGGCGGATACAAAAGCGGCGGCAATGAAGCAGACTCCTTTGCGGGA
TAGTTATAGTAACAGGGGAATGACGCTTGAGGAAGATTTAAACGAAACAAATACATTCTATCTTGAGCGCGGCCTGGCAG
TTATCCATAAAAAGCCGACGCCTGTGCAAATTGTCCAGGTGGATTACCCAAGAAGGAGCGCAGCTGTCATAAAGGAAGCC
TACTTTAAACAAGCTTCTACTACTGATTATAACGGCGTATATCGGGGGAAGTATGTCGATTTCGAAGCAAAGGAGACGAG
AAATGCAACGTCCTTTCCGTTAAAAAATTTTCATAAACATCAAATTGCCCATATGGAGAATGTGGAGAAGCAGGAAGGTA
TCAGCTTCGTCATTATTCGTTTTACCTTAACGGAGGAAATTTTCTATCTTCCGGCAAGCCGTTTGTTTGATTTCTGGAGC
AGAATGGAGAACGGCGGCCGAAAATCGATCACAAAAGCGGAGATTGAGAGCTCAGGCTTTTCGATTCCGACAGGCCTTCA
CCCCCGTATTCCCTACTTGTCTGTCATCGATAAGCTGTATTTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

60.302

99.005

0.597