Detailed information NTG0601816

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: K7T73_RS05340
• Genome accession: NZ_CP082363
• Coordinates: 1056917..1059064 (-)
• Length: 715 a.a.
• NCBI ID: WP_223663083.1
• Uniprot ID: -
• Organism: Bacillus badius strain NBPM-293
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1051917..1064064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7T73_RS05330 (K7T73_05320)	-	1053223..1054797 (+)	1575	WP_223663081.1	bifunctional UDP-sugar hydrolase/5'-nucleotidase	-
K7T73_RS05335 (K7T73_05325)	-	1054835..1056535 (+)	1701	WP_223663922.1	M3 family oligoendopeptidase	-
K7T73_RS05340 (K7T73_05330)	clpC	1056917..1059064 (-)	2148	WP_223663083.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
K7T73_RS05345 (K7T73_05335)	-	1059251..1060273 (+)	1023	WP_223663085.1	hypothetical protein	-
K7T73_RS05350 (K7T73_05340)	-	1060355..1060966 (-)	612	WP_063384136.1	CPBP family intramembrane glutamic endopeptidase	-
K7T73_RS05355 (K7T73_05345)	-	1061710..1061901 (-)	192	WP_041099658.1	DUF2187 family protein	-
K7T73_RS05360 (K7T73_05350)	-	1062194..1062388 (+)	195	WP_041099660.1	hypothetical protein	-
K7T73_RS05365 (K7T73_05355)	-	1062679..1063464 (+)	786	WP_223663087.1	SDR family oxidoreductase	-

Sequence

Protein

• Length: 715 a.a.
• Molecular weight: 80009.59 Da
• Isoelectric Point: 5.9727

>NTDB_id=601816 K7T73_RS05340 WP_223663083.1 1056917..1059064(-) (clpC) [Bacillus badius strain NBPM-293]
MLCQKCQQHQANVQFRMNINGKTTQLYLCSSCYQKNKKQMGDDAMNFQQFGGFPFDDLMKGFGFSPMNNQASQPPHLEPK
QNNGGGNGFLDQFGRNLTNMARAGLIDPVIGREKEISRIIEVLNRRNKNNPVLIGEPGTGKTAIAEGLALKIAEGDVPAK
LKEKEVYLLDVASLVANTGIRGQFEERMKQLIAELQRRKNILLFIDEIHLIVGAGSAEGSMDASNILKPALARGELQLIG
ATTLKEYRQIEKDAALERRFQPVQVSEPTVEATMQILLGLQKRYEDFHEVTFTKEALEACAKLSHRYIQDRFLPDKAIDL
LDEAGSKLNLTIDTQDKESIHERLANIAKEKEAALQQENYEKAAKLRDAEAVLEEKLQGTSEAAERPVVTVEHIQQLIEE
KTGIPVGKLQEDEQQAMKHLEDNLAKKVIGQAEAVQKVAKAIRRSRAGLKSKTRPIGSFLFVGPTGVGKTELTKSLAEEL
FGSKDAMIRLDMSEFMEKHSVSKLIGSPPGYVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDS
QGRTVSFKDTVIIMTSNAGTSSKTITVGFEKNNAVKESSILDSLGSFFKPEFLNRFDNIIEFKSLEKADLQRIVELMLEE
LNVTLREQSMTLDVTDEVKERLSELGYHPEFGARPLRRVIQEKLEDGIADFILDHPETKQLKAIMKDKEVCIVAA

Nucleotide

• Length: 2148 bp

>NTDB_id=601816 K7T73_RS05340 WP_223663083.1 1056917..1059064(-) (clpC) [Bacillus badius strain NBPM-293]
ATGTTGTGTCAAAAGTGCCAGCAACATCAAGCCAATGTCCAATTCCGCATGAATATTAACGGAAAAACAACACAGCTTTA
CTTATGCTCTAGCTGTTACCAAAAAAATAAAAAGCAAATGGGAGATGATGCGATGAACTTCCAGCAATTTGGAGGCTTTC
CTTTTGACGATTTAATGAAAGGTTTTGGATTTTCTCCTATGAACAACCAAGCTTCTCAGCCGCCTCATCTAGAACCGAAG
CAAAATAACGGCGGCGGCAACGGATTTCTTGACCAATTTGGCCGCAATTTAACAAATATGGCGAGAGCCGGCTTGATTGA
TCCAGTGATTGGACGGGAAAAAGAAATTAGCCGCATTATCGAAGTACTGAACCGCCGAAACAAAAATAATCCGGTGCTTA
TCGGGGAACCTGGTACAGGTAAAACAGCCATCGCGGAAGGTTTGGCTTTAAAAATCGCAGAAGGCGATGTGCCCGCTAAA
TTAAAAGAAAAAGAGGTCTATTTATTAGACGTAGCCTCTCTTGTAGCTAACACAGGGATCCGTGGACAATTCGAAGAAAG
AATGAAGCAGCTGATCGCGGAATTACAGCGTCGGAAAAATATTTTGCTCTTTATTGACGAAATTCACTTAATCGTTGGCG
CCGGATCTGCCGAAGGCTCCATGGATGCCAGCAATATTTTAAAACCGGCGCTTGCCCGCGGCGAACTGCAATTGATCGGT
GCGACTACTTTGAAAGAATATCGCCAAATTGAGAAGGATGCTGCACTAGAACGACGCTTCCAGCCAGTTCAAGTAAGCGA
ACCGACCGTTGAAGCAACGATGCAAATTTTGCTGGGGCTGCAAAAGCGTTATGAAGATTTCCATGAGGTAACGTTTACAA
AAGAAGCGCTTGAAGCTTGTGCAAAACTGTCCCATCGTTATATCCAGGACCGTTTCTTGCCGGATAAAGCGATTGACTTG
CTCGATGAGGCCGGCTCCAAATTAAACTTAACGATCGATACACAGGATAAAGAATCAATTCATGAGCGCCTGGCTAACAT
TGCTAAAGAAAAAGAGGCTGCCTTGCAGCAGGAAAATTATGAAAAAGCAGCGAAATTGCGTGATGCAGAAGCCGTTTTAG
AGGAAAAGTTGCAAGGTACATCTGAAGCAGCCGAGCGTCCAGTTGTGACAGTGGAACATATTCAGCAATTAATTGAAGAA
AAAACAGGCATTCCTGTCGGCAAACTTCAAGAAGATGAACAACAAGCAATGAAACATCTGGAAGACAACTTAGCAAAAAA
AGTGATTGGGCAAGCTGAGGCTGTGCAAAAAGTGGCAAAAGCGATTCGCCGCAGCCGGGCCGGATTGAAATCCAAAACCC
GCCCAATCGGCTCCTTCTTATTCGTCGGTCCGACTGGCGTCGGTAAGACAGAGCTGACTAAATCACTGGCCGAAGAACTG
TTCGGTTCCAAAGATGCCATGATTCGCCTGGATATGAGTGAATTCATGGAGAAACATAGTGTTTCTAAATTAATCGGTTC
TCCTCCGGGATATGTCGGCCATGAAGAAGCCGGACAGTTGACAGAAAAAGTGCGTCGCAATCCATACAGCATTATTTTGC
TTGATGAAATTGAGAAAGCTCATCCGGATGTGCAGCATATGTTCCTGCAAATCCTCGAAGACGGCCGCCTGACTGACAGC
CAAGGCCGGACAGTCAGCTTTAAAGACACTGTCATCATTATGACAAGCAATGCCGGAACATCCAGCAAGACAATTACTGT
CGGCTTTGAGAAAAATAATGCGGTCAAAGAAAGCTCTATTTTAGATTCACTCGGCAGCTTCTTTAAACCGGAATTCTTGA
ACCGCTTTGACAATATCATCGAATTTAAATCTCTTGAAAAAGCAGACTTGCAGCGAATTGTTGAATTAATGCTCGAAGAA
TTGAATGTCACTCTTAGAGAACAGTCAATGACTCTTGATGTGACAGATGAGGTTAAGGAGCGGCTAAGTGAACTTGGCTA
CCATCCGGAATTTGGTGCTCGCCCGCTCCGCCGCGTGATTCAAGAAAAGCTTGAAGACGGCATCGCCGACTTTATCTTGG
ATCATCCGGAAACGAAACAATTAAAAGCAATAATGAAAGACAAGGAAGTTTGTATTGTTGCAGCTTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (625-696)

• AAA domain (Cdc48 subfamily) (AAA_2) (454-619)

• ATPase family associated with various cellular activities (AAA) (AAA) (132-262)

• AAA lid domain (AAA_lid_9) (269-369)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	58.537	100	0.604
clpE	Streptococcus mutans UA159	58.3	100	0.604
clpE	Streptococcus pneumoniae R6	57.838	100	0.599
clpE	Streptococcus pneumoniae TIGR4	57.838	100	0.599
clpE	Streptococcus pneumoniae D39	57.838	100	0.599
clpE	Streptococcus pneumoniae Rx1	57.838	100	0.599
clpC	Bacillus subtilis subsp. subtilis str. 168	54.777	87.832	0.481
clpC	Streptococcus pneumoniae Rx1	44.053	95.245	0.42
clpC	Streptococcus pneumoniae D39	44.053	95.245	0.42
clpC	Streptococcus pneumoniae TIGR4	44.053	95.245	0.42
clpC	Streptococcus mutans UA159	45.22	92.168	0.417
clpC	Streptococcus thermophilus LMD-9	46.252	87.692	0.406
clpC	Streptococcus thermophilus LMG 18311	45.933	87.692	0.403
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.266	86.154	0.399