Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K7T73_RS00535 Genome accession   NZ_CP082363
Coordinates   99413..100786 (+) Length   457 a.a.
NCBI ID   WP_223662454.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 94413..105786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS00515 (K7T73_00515) - 94735..95196 (+) 462 WP_063384355.1 CtsR family transcriptional regulator -
  K7T73_RS00520 (K7T73_00520) - 95339..95761 (+) 423 WP_327809425.1 UvrB/UvrC motif-containing protein -
  K7T73_RS00525 (K7T73_00525) - 95761..96816 (+) 1056 WP_041101837.1 protein arginine kinase -
  K7T73_RS00530 (K7T73_00530) clpC 96837..99278 (+) 2442 WP_063384353.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  K7T73_RS00535 (K7T73_00535) radA 99413..100786 (+) 1374 WP_223662454.1 DNA repair protein RadA Machinery gene
  K7T73_RS00540 (K7T73_00540) - 100899..101993 (+) 1095 WP_063384352.1 PIN/TRAM domain-containing protein -
  K7T73_RS00545 (K7T73_00545) ispD 102007..102693 (+) 687 WP_063384351.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  K7T73_RS00550 (K7T73_00550) ispF 102713..103210 (+) 498 WP_063384350.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  K7T73_RS00555 (K7T73_00555) gltX 103268..104728 (+) 1461 WP_041101825.1 glutamate--tRNA ligase -
  K7T73_RS00560 (K7T73_00560) epsC 105052..105723 (+) 672 WP_162301620.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49831.53 Da        Isoelectric Point: 7.7010

>NTDB_id=601803 K7T73_RS00535 WP_223662454.1 99413..100786(+) (radA) [Bacillus badius strain NBPM-293]
MAKKKTKFICQSCGYESAKWMGRCPGCGEWNQMVEEVAITGTPKRTFMHSETTSVSKPAKLSSVETVQEPRVKTKLKEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSAQLAANKSRVLYISGEESVKQTKLRAERLAIKEEELFIYSETNLQLIHT
AIEQLAPSFVIIDSIQTVYHPEVTSAPGSVSQVRECTAELMRIAKMNGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLYFE
GERHHTYRILRAVKNRFGSTNEMGIFEMKEEGLEEVENPSEIFLEERSQGSSGSTVVASMEGTRPVLVEVQALVSPTVFG
NPRRMATGIDHNRVTLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDEPTNPTDCIIGEVGLTG
EVRRVSRIEQRVFEAAKLGFTRVILPANNLGGWKVPPGVKTIGVSAVNEALQAVFGK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=601803 K7T73_RS00535 WP_223662454.1 99413..100786(+) (radA) [Bacillus badius strain NBPM-293]
ATGGCTAAGAAAAAGACAAAATTTATTTGCCAGTCCTGCGGCTATGAGTCGGCAAAATGGATGGGGCGCTGTCCGGGCTG
CGGAGAATGGAACCAGATGGTCGAAGAGGTCGCTATTACGGGGACACCGAAACGGACCTTTATGCATTCCGAAACAACAT
CTGTTTCCAAACCGGCGAAACTCTCGAGCGTGGAGACTGTTCAAGAGCCGCGGGTAAAAACCAAGTTAAAAGAATTTAAC
CGAGTGCTCGGCGGCGGCGTGGTTCCGGGTTCGCTCGTTTTGATTGGCGGAGATCCCGGGATTGGGAAATCCACCTTGCT
TTTGCAGGTTTCTGCCCAGCTGGCAGCAAATAAAAGCAGGGTATTATACATTTCCGGCGAAGAATCTGTTAAGCAGACGA
AATTACGGGCAGAAAGATTAGCGATAAAGGAAGAAGAGCTCTTTATCTACTCGGAAACTAACTTGCAGCTCATTCATACC
GCTATTGAGCAGCTCGCACCTTCCTTTGTGATTATCGACTCGATCCAAACTGTTTATCACCCGGAGGTCACTTCTGCTCC
TGGCAGCGTTTCGCAGGTGAGGGAGTGTACGGCCGAGTTAATGAGAATAGCAAAAATGAACGGCATTGCGATCTTTATTG
TGGGGCATGTAACCAAGGAAGGCTCAATTGCCGGACCCAGATTATTGGAGCATATGGTGGACACTGTGTTATATTTTGAA
GGAGAGCGTCACCACACGTACCGGATTTTAAGAGCGGTAAAAAACCGTTTCGGGTCCACGAATGAAATGGGAATCTTTGA
GATGAAGGAGGAAGGGCTAGAGGAAGTGGAAAACCCATCGGAGATTTTTCTCGAAGAACGTTCCCAAGGCTCATCAGGTT
CGACAGTGGTTGCTTCTATGGAAGGAACGAGGCCGGTGCTTGTCGAGGTTCAGGCGCTTGTTTCGCCAACGGTTTTTGGA
AATCCGCGGCGCATGGCTACCGGCATCGATCATAACCGGGTCACGCTCTTAATGGCAGTTCTTGAAAAGCGGGTTGGCCT
GCTGCTGCAAAACCAGGATGCTTACTTGAAGGTAGCTGGAGGTGTGAAGCTTGATGAACCGGCGATTGACTTGGCTATTG
CCATCAGCATTGCTTCAAGCTTCCGCGATGAACCGACCAATCCAACTGATTGTATAATTGGTGAAGTCGGGCTGACCGGA
GAGGTAAGGAGGGTGTCAAGAATAGAGCAAAGAGTCTTTGAGGCGGCTAAGCTCGGATTTACGAGAGTCATTCTGCCCGC
AAATAATCTTGGCGGCTGGAAAGTTCCACCGGGAGTGAAAACGATTGGTGTCTCTGCGGTGAATGAAGCACTTCAAGCTG
TATTTGGCAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.074

100

0.772
  radA Streptococcus mitis NCTC 12261

65.132

99.781

0.65
  radA Streptococcus pneumoniae Rx1

64.912

99.781

0.648
  radA Streptococcus pneumoniae D39

64.912

99.781

0.648
  radA Streptococcus pneumoniae R6

64.912

99.781

0.648
  radA Streptococcus pneumoniae TIGR4

64.912

99.781

0.648
  radA Streptococcus mitis SK321

64.912

99.781

0.648