Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K7T73_RS00225 Genome accession   NZ_CP082363
Coordinates   41889..42173 (-) Length   94 a.a.
NCBI ID   WP_041101882.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 36889..47173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS00190 (K7T73_00190) - 36975..37415 (+) 441 WP_063384031.1 YaaR family protein -
  K7T73_RS00195 (K7T73_00195) holB 37422..38429 (+) 1008 WP_052475348.1 DNA polymerase III subunit delta' -
  K7T73_RS00200 (K7T73_00200) - 38422..39249 (+) 828 WP_223662425.1 stage 0 sporulation family protein -
  K7T73_RS00205 (K7T73_00205) yabA 39263..39631 (+) 369 WP_063384032.1 DNA replication initiation control protein YabA -
  K7T73_RS00210 (K7T73_00210) - 39836..40582 (+) 747 WP_041114448.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  K7T73_RS00215 (K7T73_00215) - 40566..40841 (+) 276 WP_063384034.1 GIY-YIG nuclease family protein -
  K7T73_RS00220 (K7T73_00220) rsmI 40834..41706 (+) 873 WP_087903786.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  K7T73_RS00225 (K7T73_00225) abrB 41889..42173 (-) 285 WP_041101882.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K7T73_RS00230 (K7T73_00230) metG 42583..44616 (+) 2034 WP_223662427.1 methionine--tRNA ligase -
  K7T73_RS00235 (K7T73_00235) - 44706..45476 (+) 771 WP_041114465.1 TatD family hydrolase -
  K7T73_RS00240 (K7T73_00240) rnmV 45485..46042 (+) 558 WP_041101883.1 ribonuclease M5 -
  K7T73_RS00245 (K7T73_00245) rsmA 46039..46917 (+) 879 WP_223662429.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10457.19 Da        Isoelectric Point: 6.9825

>NTDB_id=601801 K7T73_RS00225 WP_041101882.1 41889..42173(-) (abrB) [Bacillus badius strain NBPM-293]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDDKIILKKYKPSMTCHITGEVSDDNIKLAGGKLILSREGAE
QLIKEISESFASQK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=601801 K7T73_RS00225 WP_041101882.1 41889..42173(-) (abrB) [Bacillus badius strain NBPM-293]
ATGAAATCAACAGGTATTGTTCGTAAAGTTGACGAGTTGGGCCGCGTAGTTATTCCAATTGAACTTCGCCGTACATTAGG
AATCGCTGAAAAAGATGCGCTTGAAATCTATGTAGACGATGATAAAATCATCCTTAAAAAGTATAAACCAAGCATGACTT
GCCACATTACAGGGGAAGTTTCAGACGACAACATCAAACTTGCAGGCGGAAAATTAATTCTTAGCCGTGAGGGTGCAGAA
CAGCTTATAAAAGAAATTTCCGAGTCATTTGCTTCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

82.979

100

0.83