Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   K7T73_RS00020 Genome accession   NZ_CP082363
Coordinates   3065..4183 (+) Length   372 a.a.
NCBI ID   WP_063386025.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS00005 (K7T73_00005) dnaA 1..1344 (+) 1344 WP_041095685.1 chromosomal replication initiator protein DnaA -
  K7T73_RS00010 (K7T73_00010) dnaN 1535..2671 (+) 1137 WP_041095687.1 DNA polymerase III subunit beta -
  K7T73_RS00015 (K7T73_00015) yaaA 2826..3044 (+) 219 WP_041095689.1 S4 domain-containing protein YaaA -
  K7T73_RS00020 (K7T73_00020) recF 3065..4183 (+) 1119 WP_063386025.1 DNA replication/repair protein RecF Machinery gene
  K7T73_RS00025 (K7T73_00025) gyrB 4339..6264 (+) 1926 WP_041095693.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  K7T73_RS00030 (K7T73_00030) gyrA 6401..8887 (+) 2487 WP_041095694.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 42834.01 Da        Isoelectric Point: 8.6452

>NTDB_id=601799 K7T73_RS00020 WP_063386025.1 3065..4183(+) (recF) [Bacillus badius strain NBPM-293]
MHITELSLENYRNYASLNIELENKVNVFLGENAQGKTNVIESIFVLAMAKSHRTSNDKDLIRWETEYAKIKGRVQKAQGS
VPMELIISKKGKKAKCNHLEQQRLSQYIGNMNVVMFAPEDLHLVKGNPQVRRRFIDMEIGQVSPVYLHDISQYYKVLQQR
NRYLKQLQSKKVSDVTMLDVFTDQLIQLAVKIVRKRFDFIQLLQNWAQAIHSGISRGGETLNILYDPSINVSEEDDPSKM
IHMFEEKFHTQQRKEIERGVTLFGPHRDDLIFQVNGKNVQTFGSQGQQRTTALSVKLAEIELIHSEIKEYPILLLDDVLS
ELDDYRQSHLLNTIQGRVQTFVTTTSIEGINHQTLKEASTFKVESGTISQMK

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=601799 K7T73_RS00020 WP_063386025.1 3065..4183(+) (recF) [Bacillus badius strain NBPM-293]
ATGCACATAACCGAATTGTCTTTGGAAAATTACCGGAATTATGCCTCGTTAAATATTGAATTGGAAAACAAGGTGAATGT
GTTCCTTGGGGAAAATGCTCAGGGGAAAACAAATGTCATTGAATCAATCTTTGTGCTGGCTATGGCAAAGTCTCACCGAA
CCTCCAACGATAAAGATTTGATTCGCTGGGAAACGGAGTATGCTAAAATAAAAGGAAGAGTCCAAAAAGCTCAAGGCTCC
GTCCCAATGGAATTAATCATTTCGAAGAAGGGCAAGAAAGCAAAATGCAATCACTTGGAGCAGCAGCGTTTAAGCCAATA
TATCGGGAATATGAATGTTGTGATGTTTGCCCCTGAGGATCTTCACCTTGTAAAGGGCAACCCGCAGGTAAGAAGGCGGT
TCATCGATATGGAGATTGGCCAAGTCTCTCCTGTTTATCTTCATGACATCAGCCAGTATTATAAAGTGCTGCAGCAGCGC
AACCGCTATTTAAAGCAGCTGCAAAGCAAAAAAGTGAGTGATGTCACGATGCTGGATGTTTTTACAGATCAGCTCATTCA
GCTGGCTGTAAAGATTGTCAGAAAAAGATTTGATTTTATCCAGCTGCTGCAGAACTGGGCCCAGGCAATCCATTCAGGCA
TTTCGCGTGGAGGCGAAACATTAAACATTTTATATGATCCGTCTATTAATGTATCAGAGGAAGACGATCCGTCTAAAATG
ATTCATATGTTTGAAGAGAAGTTTCACACCCAGCAAAGAAAAGAAATTGAGCGGGGTGTCACTTTGTTCGGCCCGCACCG
TGATGATCTCATCTTTCAAGTCAATGGAAAAAATGTACAAACATTCGGCTCTCAAGGCCAGCAGCGGACAACCGCTTTAT
CTGTCAAGCTGGCGGAAATCGAATTGATTCATTCCGAAATCAAGGAATATCCGATTCTTTTACTTGATGATGTGTTGTCG
GAACTGGATGATTATCGCCAATCCCATTTGTTAAATACGATACAGGGAAGGGTACAAACATTTGTCACGACGACGAGCAT
AGAAGGAATTAACCATCAAACGCTGAAGGAAGCTTCTACGTTCAAAGTGGAAAGCGGAACGATCTCGCAAATGAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.925

0.659