Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K7X31_RS14025 Genome accession   NZ_CP082357
Coordinates   2917961..2918590 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain VCSW7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912961..2923590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7X31_RS14010 (K7X31_14005) helD 2913203..2915257 (-) 2055 WP_001595613.1 DNA helicase IV -
  K7X31_RS14015 (K7X31_14010) yccF 2915380..2915826 (+) 447 WP_219365457.1 YccF domain-containing protein -
  K7X31_RS14020 (K7X31_14015) yccS 2915836..2917998 (+) 2163 WP_000875038.1 YccS family putative transporter -
  K7X31_RS14025 (K7X31_14020) sxy/tfoX 2917961..2918590 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K7X31_RS14030 (K7X31_14025) sulA 2918809..2919318 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  K7X31_RS14035 (K7X31_14030) ompA 2919675..2920727 (+) 1053 WP_000750418.1 porin OmpA -
  K7X31_RS14040 (K7X31_14035) matP 2920803..2921255 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  K7X31_RS14045 (K7X31_14040) ycbZ 2921441..2923201 (+) 1761 WP_223024371.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=601743 K7X31_RS14025 WP_000839153.1 2917961..2918590(-) (sxy/tfoX) [Escherichia coli strain VCSW7]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=601743 K7X31_RS14025 WP_000839153.1 2917961..2918590(-) (sxy/tfoX) [Escherichia coli strain VCSW7]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1