Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K7X33_RS14150 Genome accession   NZ_CP082355
Coordinates   2926677..2927306 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain VCSW5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2921677..2932306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7X33_RS14135 (K7X33_14135) helD 2921919..2923973 (-) 2055 WP_001308537.1 DNA helicase IV -
  K7X33_RS14140 (K7X33_14140) yccF 2924096..2924542 (+) 447 WP_001261236.1 YccF domain-containing protein -
  K7X33_RS14145 (K7X33_14145) yccS 2924552..2926714 (+) 2163 WP_000875069.1 YccS family putative transporter -
  K7X33_RS14150 (K7X33_14150) sxy/tfoX 2926677..2927306 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K7X33_RS14155 (K7X33_14155) sulA 2927525..2928034 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  K7X33_RS14160 (K7X33_14160) ompA 2928391..2929443 (+) 1053 WP_000750418.1 porin OmpA -
  K7X33_RS14165 (K7X33_14165) matP 2929519..2929971 (-) 453 WP_000877165.1 macrodomain Ter protein MatP -
  K7X33_RS14170 (K7X33_14170) ycbZ 2930157..2931917 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=601721 K7X33_RS14150 WP_000839153.1 2926677..2927306(-) (sxy/tfoX) [Escherichia coli strain VCSW5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=601721 K7X33_RS14150 WP_000839153.1 2926677..2927306(-) (sxy/tfoX) [Escherichia coli strain VCSW5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1