Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LPT21_RS11845 Genome accession   NZ_CP099497
Coordinates   2409443..2410243 (+) Length   266 a.a.
NCBI ID   WP_001807805.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0213-M-4A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2404443..2415243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT21_RS11830 (LPT21_11830) walK 2405113..2406939 (+) 1827 WP_000871607.1 cell wall metabolism sensor histidine kinase WalK -
  LPT21_RS11835 (LPT21_11835) yycH 2406932..2408266 (+) 1335 WP_001060144.1 two-component system activity regulator YycH -
  LPT21_RS11840 (LPT21_11840) yycI 2408267..2409055 (+) 789 WP_001104170.1 two-component system regulatory protein YycI -
  LPT21_RS11845 (LPT21_11845) vicX 2409443..2410243 (+) 801 WP_001807805.1 MBL fold metallo-hydrolase Regulator
  LPT21_RS11850 (LPT21_11850) adsA 2410470..2412791 (+) 2322 WP_000645765.1 LPXTG-anchored adenosine synthase AdsA -
  LPT21_RS11855 (LPT21_11855) rlmH 2413157..2413636 (+) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LPT21_RS11860 (LPT21_11860) - 2413985..2414659 (-) 675 WP_194381409.1 IS6 family transposase -
  LPT21_RS11865 (LPT21_11865) - 2414743..2415084 (+) 342 WP_001797647.1 hydroxymethylglutaryl-CoA synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30313.56 Da        Isoelectric Point: 6.5000

>NTDB_id=601686 LPT21_RS11845 WP_001807805.1 2409443..2410243(+) (vicX) [Staphylococcus aureus strain 0213-M-4A]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIKDLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPMDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMTDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
EHDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=601686 LPT21_RS11845 WP_001807805.1 2409443..2410243(+) (vicX) [Staphylococcus aureus strain 0213-M-4A]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TCTATTAGTTGATGTTGGTTTGACTGGCAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTAAAGATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATTCCTATGGATCAGAAATTTATTTTTAATCC
TTATGAAACGAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAACGTGTCACATGATGCGATAGATCCGCAATTTTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTAACGGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAGAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGGTCATGCGATGACAGACGTGATTACAGGTAACACGA
AACGTATTTACTTATCGCATTTATCACAAGATAATAACATGAAAGATTTGGCGCGTATGAGTGTTGGCCAAGTATTGAAC
GAACACGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

49.027

96.617

0.474