Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CHBNTHi_RS03320 Genome accession   NZ_AP018781
Coordinates   657347..657949 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain CHBN-V-1 isolate 13H43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 652347..662949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHBNTHi_RS03300 (CHBNV1_06250) - 652722..654392 (+) 1671 WP_110437666.1 fructose-specific PTS transporter subunit EIIC -
  CHBNTHi_RS03310 (CHBNV1_06260) secG 654926..655267 (-) 342 WP_005649335.1 preprotein translocase subunit SecG -
  CHBNTHi_RS03315 (CHBNV1_06270) - 655376..657331 (-) 1956 WP_110437667.1 DNA topoisomerase III -
  CHBNTHi_RS03320 (CHBNV1_06280) recR 657347..657949 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  CHBNTHi_RS03325 (CHBNV1_06290) - 658080..658409 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  CHBNTHi_RS03330 (CHBNV1_06300) - 658562..659407 (-) 846 WP_005666516.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CHBNTHi_RS03335 (CHBNV1_06310) - 659480..662074 (-) 2595 WP_110437668.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=60163 CHBNTHi_RS03320 WP_005626527.1 657347..657949(-) (recR) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=60163 CHBNTHi_RS03320 WP_005626527.1 657347..657949(-) (recR) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
ATGCAAAGCAGCCCACTTTTAGAACATCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACTGGGCAATTTTCAGGACGTTATTTTGT
CTTAATGGGACACTTATCACCACTTGATGGCATTGGTCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGTTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACTGTGGAAGGCGATGCAACAGCAAACTACATCGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTGGGTGGGGAACTAGAAACTGTAGACGGCAC
AACGCTTACTCACTCATTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment