Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K7H07_RS11170 Genome accession   NZ_CP082336
Coordinates   2309893..2311260 (-) Length   455 a.a.
NCBI ID   WP_002509403.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain AHKW2e     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2304893..2316260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7H07_RS11155 (K7H07_11155) cysE 2305991..2306641 (-) 651 WP_002509406.1 serine O-acetyltransferase -
  K7H07_RS11160 (K7H07_11160) gltX 2306942..2308399 (-) 1458 WP_021459825.1 glutamate--tRNA ligase -
  K7H07_RS11165 (K7H07_11165) - 2308767..2309828 (-) 1062 WP_031266831.1 PIN/TRAM domain-containing protein -
  K7H07_RS11170 (K7H07_11170) radA 2309893..2311260 (-) 1368 WP_002509403.1 DNA repair protein RadA Machinery gene
  K7H07_RS11175 (K7H07_11175) - 2311791..2314262 (-) 2472 WP_021459824.1 ATP-dependent Clp protease ATP-binding subunit -
  K7H07_RS11180 (K7H07_11180) - 2314276..2315286 (-) 1011 WP_002509401.1 protein arginine kinase -
  K7H07_RS11185 (K7H07_11185) - 2315279..2315836 (-) 558 WP_222985156.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49949.33 Da        Isoelectric Point: 6.8755

>NTDB_id=601595 K7H07_RS11170 WP_002509403.1 2309893..2311260(-) (radA) [Staphylococcus arlettae strain AHKW2e]
MAKKKVIFECMACGYQSPKWMGKCPSCGAWNQMEESIEQQASSPKHGVRSKDTASKVQKLNEVNNETAPRIESKSAEFNR
VLGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQSHNVLYITGEESLNQTKLRAERLDEDSSHLNVFAETDLEIIHDTV
KKMKPDLIVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENFLLQQQDAYIKVAGGVRLTEPAVDLGIIMATASSFKDLAVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVVIPETNIGGWTFPDNIQVIGVSSVHDALKYALKQ

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=601595 K7H07_RS11170 WP_002509403.1 2309893..2311260(-) (radA) [Staphylococcus arlettae strain AHKW2e]
TTGGCCAAAAAGAAAGTGATATTTGAATGTATGGCTTGTGGCTATCAGTCTCCGAAATGGATGGGGAAATGTCCAAGTTG
TGGTGCGTGGAACCAAATGGAGGAGAGTATAGAGCAACAAGCTTCAAGCCCAAAACATGGAGTGAGAAGTAAAGATACTG
CATCGAAAGTGCAGAAACTTAATGAAGTAAATAATGAAACAGCACCTAGAATAGAAAGTAAATCTGCAGAGTTTAACAGA
GTATTGGGTGGTGGCATAGTTAGTGGATCGTTAGTGCTCATTGGCGGTGATCCCGGAATTGGGAAATCAACGTTACTGTT
ACAAATATGTGCAGCGTTATCACAAAGCCACAATGTGCTCTATATTACGGGAGAAGAATCATTAAATCAAACTAAGTTAC
GAGCTGAACGTTTAGATGAAGACTCAAGTCATTTAAACGTATTCGCTGAAACAGATTTAGAAATTATTCATGATACTGTA
AAAAAAATGAAACCTGATTTAATCGTTGTAGATTCGATCCAAACGATATTCCATCCTGAAATTAGTTCTGCACCTGGCTC
TGTGTCACAAGTGAGAGAGAGTACGCAAAGTTTAATGAACATTGCTAAACAAATGAATATTGCGACCTTTATCGTAGGAC
ATGTAACTAAAGAAGGCCAAATTGCTGGGCCGCGGTTGTTAGAACATATGGTAGATACAGTGTTGTATTTTGAAGGTGAT
GAACATCATGCCTATCGTATTTTACGTGCGGTCAAAAACCGTTTTGGTTCAACCAATGAAATGGGAATTTTTGAAATGAA
ACAAAGCGGACTAAAAGGTGTCAAAAACCCTTCAGAGATGTTTTTAGAAGAGCGTTCGACGAATGTGCCAGGTTCAACTA
TTGTATCAACGATGGAAGGGACAAGACCACTATTGATTGAAGTACAAGCATTAGTTACACCAACGACCTTTAATAACCCG
AGACGTATGGCGACAGGTATTGATCATAATAGGCTTAGTTTATTGATGGCAGTGTTAGAGAAAAAAGAGAATTTTTTATT
ACAACAACAAGATGCATATATTAAAGTTGCTGGTGGTGTACGTCTAACAGAACCTGCTGTTGACTTAGGAATTATAATGG
CTACGGCTTCTAGTTTTAAAGATTTAGCTGTTGATGGTCTCGATTGTTTCATCGGAGAAGTTGGACTTACTGGTGAAGTA
CGTCGTGTATCCAGAATCGAACAACGTGTACAAGAAGCTGCAAAGCTTGGTTTTAAAAGGGTTGTTATCCCTGAAACAAA
TATTGGAGGCTGGACTTTCCCTGATAATATTCAAGTTATCGGTGTTTCTAGCGTTCATGATGCATTAAAATATGCATTGA
AACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.474

100

0.646
  radA Streptococcus pneumoniae Rx1

59.111

98.901

0.585
  radA Streptococcus pneumoniae D39

59.111

98.901

0.585
  radA Streptococcus pneumoniae R6

59.111

98.901

0.585
  radA Streptococcus pneumoniae TIGR4

59.111

98.901

0.585
  radA Streptococcus mitis NCTC 12261

59.111

98.901

0.585
  radA Streptococcus mitis SK321

59.111

98.901

0.585