Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHBNTHi_RS02590 Genome accession   NZ_AP018781
Coordinates   512486..513139 (+) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-1 isolate 13H43     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 507486..518139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHBNTHi_RS02560 speFL 507504..507698 (-) 195 WP_100059562.1 leader peptide SpeFL -
  CHBNTHi_RS02565 (CHBNV1_04840) - 507904..508908 (-) 1005 WP_110437523.1 ornithine carbamoyltransferase -
  CHBNTHi_RS02570 (CHBNV1_04850) - 509310..510128 (+) 819 WP_005651073.1 Cof-type HAD-IIB family hydrolase -
  CHBNTHi_RS02575 crcB 510128..510514 (+) 387 WP_005651074.1 fluoride efflux transporter CrcB -
  CHBNTHi_RS02580 (CHBNV1_04870) recX 510511..510969 (-) 459 WP_005651075.1 recombination regulator RecX -
  CHBNTHi_RS02585 (CHBNV1_04880) recA 511048..512112 (-) 1065 WP_005651076.1 recombinase RecA Machinery gene
  CHBNTHi_RS02590 (CHBNV1_04890) sxy/tfoX 512486..513139 (+) 654 WP_005692773.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=60158 CHBNTHi_RS02590 WP_005692773.1 512486..513139(+) (sxy/tfoX) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=60158 CHBNTHi_RS02590 WP_005692773.1 512486..513139(+) (sxy/tfoX) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment