Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   K7H07_RS04310 Genome accession   NZ_CP082336
Coordinates   910508..911224 (-) Length   238 a.a.
NCBI ID   WP_193325466.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain AHKW2e     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 905508..916224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7H07_RS04290 (K7H07_04290) - 906480..906704 (+) 225 WP_002509111.1 sulfurtransferase TusA family protein -
  K7H07_RS04295 (K7H07_04295) - 906955..907914 (+) 960 WP_021459256.1 LacI family DNA-binding transcriptional regulator -
  K7H07_RS04300 (K7H07_04300) - 907996..909480 (+) 1485 WP_193325464.1 sucrose-6-phosphate hydrolase -
  K7H07_RS04305 (K7H07_04305) - 909477..910439 (+) 963 WP_193325465.1 carbohydrate kinase family protein -
  K7H07_RS04310 (K7H07_04310) agrA 910508..911224 (-) 717 WP_193325466.1 quorum-sensing response regulator AgrA Regulator
  K7H07_RS04315 (K7H07_04315) agrC 911237..912535 (-) 1299 WP_002509116.1 quorum-sensing sensor histidine kinase AgrC -
  K7H07_RS04320 (K7H07_04320) agrD 912563..912700 (-) 138 WP_002509117.1 cyclic lactone autoinducer peptide AgrD -
  K7H07_RS04325 (K7H07_04325) - 912697..913272 (-) 576 WP_002509118.1 accessory gene regulator AgrB -
  K7H07_RS04330 (K7H07_04330) - 914015..914800 (-) 786 WP_002509119.1 carbon-nitrogen family hydrolase -
  K7H07_RS04335 (K7H07_04335) - 915057..915686 (-) 630 WP_021459259.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27796.58 Da        Isoelectric Point: 4.8504

>NTDB_id=601573 K7H07_RS04310 WP_193325466.1 910508..911224(-) (agrA) [Staphylococcus arlettae strain AHKW2e]
MKIFICEDDVRQRDNMVSIIDNYIMIEEKPMEIALATGDPYEILAEAKNQQGVGCYFLDIQLDADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKIAAMDFIFKDDPEELKSRIIDCIETSETRLNLLSKDSSVETIELKRGSNSVYVRYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDERFFRCHNSFVVNRHNIESIDSKERIVYFNNQEYCYASVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=601573 K7H07_RS04310 WP_193325466.1 910508..911224(-) (agrA) [Staphylococcus arlettae strain AHKW2e]
TTGAAAATTTTCATATGCGAAGATGATGTGAGGCAGCGTGACAATATGGTTTCTATAATTGATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGCATTGGCTACTGGTGATCCTTATGAGATTTTAGCAGAAGCTAAAAATCAGCAAGGCGTTG
GCTGTTACTTTTTAGATATACAGCTTGATGCAGATATCAATGGCATTAAATTAGCAAGTGAGATTCGAAAACATGACCCA
GTGGGCAACATCATTTTTGTTACAAGCCATAGTGAACTTACATATTTAACATTTGTTTATAAAATAGCTGCAATGGATTT
TATCTTTAAAGATGATCCTGAGGAATTAAAATCTCGCATTATCGATTGTATAGAAACGTCTGAAACACGCTTAAATCTTT
TATCGAAAGACAGTAGCGTTGAAACTATAGAACTTAAACGCGGTAGTAATTCAGTATATGTACGTTACGATGATATTATG
TTTTTTGAATCTTCATCAAAATCACACCGTTTAATTGCGCATTTAGACAATCGACAAATTGAATTTTATGGTAACTTAAA
AGAACTCAGTCAATTAGATGAGCGCTTTTTCAGGTGTCACAATAGCTTTGTGGTTAATCGACATAATATTGAATCCATTG
ATTCTAAAGAACGGATCGTTTATTTCAATAATCAAGAATATTGCTATGCATCAGTTCGAAATATAAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.134

100

0.861