Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LPT16_RS05945 Genome accession   NZ_CP099495
Coordinates   1204787..1205758 (-) Length   323 a.a.
NCBI ID   WP_000876311.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JL28     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1199787..1210758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT16_RS05920 (LPT16_05920) murB 1200367..1201290 (+) 924 WP_000608436.1 UDP-N-acetylmuramate dehydrogenase -
  LPT16_RS05925 (LPT16_05925) - 1201308..1201622 (+) 315 WP_001123293.1 CHY zinc finger protein -
  LPT16_RS05930 (LPT16_05930) - 1201939..1202967 (-) 1029 WP_000754459.1 siderophore ABC transporter substrate-binding protein -
  LPT16_RS05935 (LPT16_05935) - 1203086..1203847 (-) 762 WP_000616865.1 ABC transporter ATP-binding protein -
  LPT16_RS05940 (LPT16_05940) - 1203844..1204800 (-) 957 WP_001245567.1 iron chelate uptake ABC transporter family permease subunit -
  LPT16_RS05945 (LPT16_05945) ceuB 1204787..1205758 (-) 972 WP_000876311.1 ABC transporter permease Machinery gene
  LPT16_RS05950 (LPT16_05950) - 1205842..1205913 (-) 72 Protein_1148 hypothetical protein -
  LPT16_RS05955 (LPT16_05955) nrdF 1206128..1207099 (-) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  LPT16_RS05960 (LPT16_05960) nrdE 1207219..1209324 (-) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  LPT16_RS05965 (LPT16_05965) nrdI 1209287..1209685 (-) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35558.04 Da        Isoelectric Point: 10.1963

>NTDB_id=601571 LPT16_RS05945 WP_000876311.1 1204787..1205758(-) (ceuB) [Staphylococcus aureus strain JL28]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=601571 LPT16_RS05945 WP_000876311.1 1204787..1205758(-) (ceuB) [Staphylococcus aureus strain JL28]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATCTCATTACGT
ACAAACGCAGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATCTTGTA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCAAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATCAATATTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTCGTG
ACAGTTGGAACTTTACCCTTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTAAAAAATGC
AATTCCTCATACGATGATGTTAGGTGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCATATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.812

99.071

0.474