Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K7G97_RS04975 Genome accession   NZ_CP082333
Coordinates   963151..964857 (+) Length   568 a.a.
NCBI ID   WP_023467587.1    Uniprot ID   -
Organism   Exiguobacterium acetylicum strain EYLC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958151..969857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G97_RS04950 (K7G97_04950) xseB 958632..958853 (+) 222 WP_023467583.1 exodeoxyribonuclease VII small subunit -
  K7G97_RS04955 (K7G97_04955) - 958850..959719 (+) 870 WP_223041499.1 polyprenyl synthetase family protein -
  K7G97_RS04960 (K7G97_04960) dxs 959837..961723 (+) 1887 WP_223041500.1 1-deoxy-D-xylulose-5-phosphate synthase -
  K7G97_RS04965 (K7G97_04965) - 961730..962536 (+) 807 WP_223041501.1 TlyA family RNA methyltransferase -
  K7G97_RS04970 (K7G97_04970) ahrC 962689..963138 (+) 450 WP_023467586.1 transcriptional regulator AhrC/ArgR -
  K7G97_RS04975 (K7G97_04975) recN 963151..964857 (+) 1707 WP_023467587.1 DNA repair protein RecN Machinery gene
  K7G97_RS04980 (K7G97_04980) spo0A 964861..965583 (+) 723 WP_074668437.1 sporulation transcription factor Spo0A -
  K7G97_RS04985 (K7G97_04985) - 965620..966198 (-) 579 WP_223041502.1 dihydrofolate reductase family protein -
  K7G97_RS04990 (K7G97_04990) - 966874..967128 (-) 255 WP_058265115.1 DUF2627 family protein -
  K7G97_RS04995 (K7G97_04995) - 967251..968906 (+) 1656 WP_223041503.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64162.70 Da        Isoelectric Point: 4.5994

>NTDB_id=601547 K7G97_RS04975 WP_023467587.1 963151..964857(+) (recN) [Exiguobacterium acetylicum strain EYLC1]
MLAELSIKQFAIIDELQIDFKKGMTVLTGETGAGKSIVLDAIGLLIGGRGSAEFVRYGEDRAELEGLFLIEDDHLVYDLA
EEYGIDIEDGLIILRRDLFATGKSVCRVNNKLVTLTILREFGRVLVDMHGQHEHQHLMDSTYHQAILDDFAQETIAPLLQ
AYQSGYQAYEEKRTALQSLAQSEQELAQRIDLLSFQTEEIEGAKLRAHEEDELLVERNRLANFEKLYASLKTAYDALHDE
MRGIDSVGDAMRELQQASSIDEQFSQQSDAIASAFYGLEEVGYAIRDQLETLEFDSNRLDEIEQRLSVFQQLKRKYGATI
EEVIAYGEKIRVELDTMTNRDERIERLKAEVEQLEGELFEIGGRLSQQRRKAAVQLSEAIHLELRELYMEKARFEIRFLQ
DGKTPMLRKNGIDQVEFFIMTNAGEPFKSLGKVASGGELSRIMLGLKSIFSRSVGVASIIFDEVDTGVSGRVAQAMAEKI
YRLSVDGQVLCITHLPQVASMADQHLYIRKIEETDRTTTQVNVLSQSDRGNELGRMISGAHMTDLTLRHAEELMDQAKTM
KESLKNGV

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=601547 K7G97_RS04975 WP_023467587.1 963151..964857(+) (recN) [Exiguobacterium acetylicum strain EYLC1]
ATGCTAGCTGAATTATCGATCAAACAATTTGCGATCATTGACGAGCTACAGATCGACTTTAAAAAAGGAATGACCGTCTT
GACTGGGGAAACAGGTGCCGGTAAATCGATCGTTCTCGACGCGATCGGATTATTGATTGGTGGACGTGGATCCGCGGAAT
TCGTTCGATACGGGGAAGATCGGGCGGAGCTAGAAGGGTTGTTTCTGATTGAAGACGACCATCTCGTCTATGATCTCGCA
GAAGAGTATGGTATCGATATCGAAGATGGATTGATCATCTTACGACGTGATCTGTTCGCGACCGGGAAAAGTGTCTGTCG
CGTCAACAATAAGCTGGTCACACTGACGATCTTACGGGAGTTCGGACGTGTCCTCGTCGACATGCACGGGCAACATGAAC
ATCAGCATTTAATGGACAGTACGTATCATCAAGCGATTCTCGATGACTTCGCGCAAGAGACGATTGCACCGCTCCTTCAA
GCCTACCAGTCCGGTTATCAAGCGTATGAAGAAAAACGGACGGCGCTGCAATCGCTCGCGCAAAGTGAGCAAGAACTCGC
TCAACGGATTGATTTACTATCGTTTCAGACGGAGGAGATCGAAGGCGCAAAACTTCGAGCACATGAGGAAGACGAGTTGC
TCGTCGAACGAAATCGTCTCGCGAATTTCGAGAAGCTATATGCGTCACTGAAGACAGCGTACGATGCTTTGCATGATGAG
ATGCGCGGCATCGACTCTGTCGGAGATGCGATGCGTGAACTACAACAAGCATCAAGCATCGACGAACAGTTTTCGCAGCA
GAGTGACGCGATCGCAAGCGCTTTTTATGGACTCGAAGAAGTCGGGTATGCGATTCGAGATCAACTTGAAACACTTGAGT
TTGATTCCAATCGACTCGATGAGATCGAACAACGTTTATCCGTCTTTCAACAACTGAAACGAAAATACGGGGCGACGATC
GAGGAAGTCATTGCGTATGGGGAAAAAATTCGAGTTGAACTTGATACGATGACGAATCGAGATGAACGGATTGAGCGCTT
AAAAGCCGAAGTCGAACAGCTCGAAGGCGAATTGTTTGAGATAGGCGGGCGTCTGTCGCAACAGCGTCGAAAAGCGGCCG
TTCAATTAAGCGAAGCGATTCATCTGGAGTTACGTGAGCTCTACATGGAAAAAGCGCGGTTTGAAATTCGTTTTCTTCAA
GACGGGAAGACACCGATGCTACGCAAGAACGGAATCGACCAAGTGGAGTTCTTCATCATGACGAATGCGGGAGAGCCATT
CAAGTCGCTCGGAAAAGTTGCATCGGGCGGGGAGTTATCTCGTATCATGCTCGGATTGAAGTCAATCTTCTCGCGCTCGG
TCGGAGTTGCTTCGATCATTTTCGATGAAGTCGATACAGGAGTATCGGGTCGTGTCGCACAAGCGATGGCTGAAAAAATC
TACCGATTATCGGTAGACGGACAAGTGCTTTGTATTACGCACTTACCGCAAGTCGCTTCGATGGCCGATCAACATCTCTA
TATTCGGAAAATCGAGGAGACGGATCGTACGACGACACAGGTCAACGTCTTGTCTCAGTCAGATCGAGGAAACGAACTAG
GACGGATGATTTCCGGTGCACATATGACGGATTTGACGTTACGCCATGCCGAGGAATTGATGGATCAGGCGAAGACGATG
AAAGAATCGCTTAAAAATGGGGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.054

100

0.535