Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K7G97_RS00540 Genome accession   NZ_CP082333
Coordinates   96764..98140 (+) Length   458 a.a.
NCBI ID   WP_029343076.1    Uniprot ID   -
Organism   Exiguobacterium acetylicum strain EYLC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 91764..103140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G97_RS00520 (K7G97_00520) - 92265..92720 (+) 456 WP_023466578.1 CtsR family transcriptional regulator -
  K7G97_RS00525 (K7G97_00525) - 92746..93174 (+) 429 WP_029343073.1 hypothetical protein -
  K7G97_RS00530 (K7G97_00530) - 93167..94240 (+) 1074 WP_195866116.1 protein arginine kinase -
  K7G97_RS00535 (K7G97_00535) clpC 94240..96687 (+) 2448 WP_023466588.1 ATP-dependent protease ATP-binding subunit ClpC -
  K7G97_RS00540 (K7G97_00540) radA 96764..98140 (+) 1377 WP_029343076.1 DNA repair protein RadA Machinery gene
  K7G97_RS00545 (K7G97_00545) - 98268..99353 (+) 1086 WP_023466590.1 PIN/TRAM domain-containing protein -
  K7G97_RS00550 (K7G97_00550) ispD 99486..100169 (+) 684 WP_223041107.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  K7G97_RS00555 (K7G97_00555) ispF 100172..100654 (+) 483 WP_029343079.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  K7G97_RS00560 (K7G97_00560) gltX 100698..102146 (+) 1449 WP_023466595.1 glutamate--tRNA ligase -
  K7G97_RS00565 (K7G97_00565) epsC 102374..103093 (+) 720 WP_255343794.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50039.64 Da        Isoelectric Point: 6.6525

>NTDB_id=601542 K7G97_RS00540 WP_029343076.1 96764..98140(+) (radA) [Exiguobacterium acetylicum strain EYLC1]
MAKLKTKFVCQSCGTESPKWMGRCSGCGEWNTMVEEVVEEKKGRRGAAFVHTTTKQLKPERLANIVSQEESRVFTGSGEF
DRVLGGGIVPGSMVLVGGDPGIGKSTILLQTSARLAQRGEKVLYISGEESLKQTKLRAERLGLPTQDLFVLSETDMNMIE
RVVDEEQPRFLIIDSIQTVYIDEIQSAPGSVTQVRECTAMLMKIAKSRGIAIFIVGHVTKQGSIAGPRLLEHMVDAVLYF
EGERHHTFRILRAVKNRFGSTNEIGIFEMRESGLEEVLNPSEIFLEERTSGVSGSTIVASMEGTRTVLVELQALISPTSF
GNPRRMATGIDQNKVALLMAVLEKRSGLLLQTQDAYLKAAGGVKLDEPAIDLAVCVAIASSFRDKPTRPTDVVIGEVGLT
GEVRRVSRIEQRVAEAAKLGFTRAIIPKNNLGGWTYPDGITVVGVESVDEALRETIPF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=601542 K7G97_RS00540 WP_029343076.1 96764..98140(+) (radA) [Exiguobacterium acetylicum strain EYLC1]
TTGGCTAAGTTAAAAACAAAATTCGTTTGTCAAAGCTGTGGAACCGAATCACCGAAATGGATGGGACGTTGTTCTGGATG
CGGAGAATGGAACACGATGGTCGAAGAAGTCGTCGAAGAGAAAAAAGGACGGCGCGGTGCCGCTTTCGTTCATACGACGA
CAAAACAATTGAAGCCAGAGCGCCTCGCGAACATCGTCTCGCAAGAGGAGAGTCGCGTCTTTACCGGAAGTGGTGAATTC
GACCGTGTCCTCGGAGGCGGTATCGTTCCAGGTTCGATGGTGCTTGTTGGAGGAGATCCGGGGATCGGGAAGTCGACGAT
CTTACTGCAGACGAGCGCACGTCTTGCCCAACGCGGCGAAAAAGTGCTTTACATCTCAGGAGAAGAATCGCTCAAACAAA
CTAAATTGCGCGCGGAACGGCTTGGCTTACCGACTCAGGATTTGTTCGTCCTGAGTGAGACGGATATGAACATGATTGAA
CGTGTCGTCGATGAAGAACAGCCACGTTTTTTAATCATCGACTCGATTCAAACCGTTTATATTGATGAAATCCAGTCTGC
ACCCGGGAGTGTGACACAGGTACGTGAATGTACGGCGATGCTGATGAAAATTGCGAAGAGTCGCGGTATTGCGATCTTCA
TCGTCGGTCACGTCACGAAACAGGGTTCGATTGCTGGACCACGTTTACTAGAGCACATGGTGGATGCCGTCTTGTATTTC
GAAGGCGAACGTCATCATACGTTCCGGATTCTGCGTGCCGTCAAAAACCGATTTGGTTCAACGAATGAGATCGGAATTTT
TGAGATGCGGGAGTCTGGTCTTGAAGAAGTCTTGAATCCTTCAGAAATTTTCCTTGAGGAGCGGACGTCCGGTGTATCCG
GTTCGACGATCGTCGCTTCGATGGAAGGGACACGGACGGTCCTTGTCGAACTGCAAGCGTTGATTTCACCGACGTCATTC
GGAAATCCAAGACGGATGGCGACCGGAATCGATCAAAATAAGGTGGCTTTATTGATGGCTGTGCTTGAGAAACGATCGGG
TCTTCTCCTTCAGACACAAGATGCGTACCTCAAGGCAGCCGGTGGTGTGAAGCTTGATGAACCGGCGATTGACTTGGCGG
TTTGTGTCGCGATTGCTTCTAGTTTCCGTGACAAGCCGACGCGTCCGACGGATGTCGTGATTGGTGAAGTCGGATTGACA
GGTGAGGTTCGCCGTGTATCGCGAATCGAACAACGTGTAGCAGAAGCAGCCAAACTCGGTTTCACACGGGCGATCATTCC
GAAAAATAACTTAGGCGGCTGGACGTATCCGGACGGGATTACGGTCGTCGGTGTCGAGAGTGTGGACGAAGCATTACGTG
AAACCATTCCGTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-222)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.588

99.563

0.723
  radA Streptococcus pneumoniae Rx1

62.775

99.127

0.622
  radA Streptococcus pneumoniae D39

62.775

99.127

0.622
  radA Streptococcus pneumoniae R6

62.775

99.127

0.622
  radA Streptococcus pneumoniae TIGR4

62.775

99.127

0.622
  radA Streptococcus mitis NCTC 12261

62.775

99.127

0.622
  radA Streptococcus mitis SK321

62.775

99.127

0.622