Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   NC516_RS09805 Genome accession   NZ_CP099485
Coordinates   1935764..1937512 (-) Length   582 a.a.
NCBI ID   WP_016265781.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1930764..1942512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS09785 (NC516_09785) - 1931872..1933341 (+) 1470 WP_016265778.1 ABC transporter permease -
  NC516_RS09790 (NC516_09790) - 1933357..1934019 (+) 663 WP_011375523.1 ABC transporter ATP-binding protein -
  NC516_RS09795 (NC516_09795) - 1934113..1934601 (+) 489 WP_016265780.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  NC516_RS09800 (NC516_09800) - 1934649..1935302 (-) 654 WP_011375525.1 MIP family channel protein -
  NC516_RS09805 (NC516_09805) recQ 1935764..1937512 (-) 1749 WP_016265781.1 DNA helicase RecQ Machinery gene
  NC516_RS09810 (NC516_09810) - 1937625..1938185 (-) 561 WP_076645058.1 TMEM175 family protein -
  NC516_RS09815 (NC516_09815) - 1938297..1939070 (+) 774 WP_252814930.1 hypothetical protein -
  NC516_RS09820 (NC516_09820) - 1939084..1939566 (-) 483 WP_025016166.1 DUF3955 domain-containing protein -
  NC516_RS09825 (NC516_09825) - 1939886..1940200 (+) 315 WP_025016165.1 SemiSWEET family transporter -
  NC516_RS09830 (NC516_09830) - 1940712..1941095 (+) 384 WP_082268187.1 YxeA family protein -
  NC516_RS09835 (NC516_09835) - 1941139..1941678 (-) 540 WP_076645062.1 cysteine hydrolase family protein -
  NC516_RS09840 (NC516_09840) - 1941792..1942190 (+) 399 WP_076645064.1 AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65734.35 Da        Isoelectric Point: 5.1646

>NTDB_id=601510 NC516_RS09805 WP_016265781.1 1935764..1937512(-) (recQ) [Latilactobacillus sakei strain WiKim0095]
MQAQAVLKEKFGYDHFREGQADVIESLLAGTNVLAIMPTGGGKSLCYQIPALMLPGLTLVVSPLISLMKDQVDALNENGI
PATFINSTLTQGEVQERFNQAARGEVKLLYVSPERLDSDYFLADLAELTIDLIAVDEAHCISQWGHDFRPSYLRLTDTIK
SMRQQPTIVALTATATSQVADDIMLRLGIQHEVKTGFSRENLAFQVVKNQNSDRYLIDYLKVNKQKSGIIYASTRKEVER
LTKLIEKAKLAVTMYHGGLNEMVRRQNQEDFLYDRKPIMVATNAFGMGIDKSNVRFVVHAQIPGSLEAYYQEAGRAGRDG
LPSEAILLFKVNDVQIQHFFIDQSEMDDENKQREYAKLQEMTQYANTQQCLQQYIVNYFDDDCEKCGRCSNCLDTRESQD
ITIDVQKVLSCIKRMDERFGKVMVAQVLTGSKNQKIMQFRFDELPTYGLMRGDSQKEVSGLIDYLVASGYLRASGGQYPV
LQITLAGVKVLKGQEKVSRKMAAKVQKTLPEDNELFERLRELRRDLAEEQGVPPFVIFSDKTLYSMCEIIPTSLTEMLDV
KGVGENKLEKYGELFLDILVAE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=601510 NC516_RS09805 WP_016265781.1 1935764..1937512(-) (recQ) [Latilactobacillus sakei strain WiKim0095]
ATGCAGGCACAAGCAGTACTAAAAGAAAAATTTGGCTATGATCATTTTAGAGAAGGCCAAGCAGATGTGATTGAATCCTT
GCTAGCAGGGACCAATGTATTGGCGATTATGCCGACTGGTGGCGGGAAGTCGTTATGTTACCAGATTCCAGCGCTGATGT
TACCGGGGTTAACGCTAGTCGTTTCACCATTGATTTCGCTGATGAAAGATCAAGTCGATGCGCTCAACGAAAATGGGATT
CCGGCAACGTTTATCAACAGTACCTTGACGCAAGGTGAGGTGCAGGAGCGCTTCAATCAGGCCGCACGTGGTGAAGTAAA
GTTGCTTTATGTGTCGCCGGAACGGTTGGACTCTGATTACTTTTTAGCGGATTTAGCCGAATTAACGATTGATTTGATTG
CCGTTGATGAAGCGCATTGTATCTCGCAATGGGGGCACGATTTCCGACCTAGTTATTTACGCTTAACGGATACAATTAAA
AGCATGCGGCAACAACCAACGATTGTCGCACTAACGGCGACCGCTACGTCACAAGTAGCTGATGATATTATGTTGCGCTT
AGGGATTCAACATGAAGTGAAGACTGGTTTTTCACGGGAAAACCTGGCTTTTCAAGTGGTTAAAAACCAAAACAGTGATC
GCTACTTAATCGATTATTTAAAGGTTAATAAGCAAAAATCCGGCATCATCTATGCTAGTACACGTAAAGAAGTTGAACGG
CTCACGAAGCTGATTGAAAAAGCGAAACTGGCAGTCACAATGTATCATGGTGGCTTAAATGAAATGGTGCGCCGGCAAAA
TCAAGAGGATTTTCTCTACGACCGTAAACCGATTATGGTCGCCACGAATGCTTTTGGGATGGGGATTGATAAGAGTAATG
TGCGATTTGTCGTGCATGCCCAAATTCCCGGCAGCTTAGAAGCTTATTATCAAGAAGCAGGTCGGGCCGGACGTGATGGC
TTACCGAGTGAGGCCATCTTACTGTTTAAAGTCAATGATGTCCAAATCCAACATTTTTTCATCGATCAATCAGAGATGGA
CGATGAAAATAAGCAACGGGAATACGCTAAGTTACAAGAAATGACACAATACGCCAACACGCAACAGTGCTTGCAACAAT
ATATCGTCAATTATTTTGATGATGACTGTGAAAAATGTGGCCGTTGTAGCAATTGTCTTGATACACGCGAATCACAAGAC
ATTACAATTGATGTCCAAAAGGTTTTATCGTGTATCAAGCGAATGGATGAACGTTTCGGCAAAGTAATGGTCGCGCAAGT
CTTGACGGGCTCTAAGAATCAGAAGATTATGCAGTTCCGCTTTGATGAATTGCCAACATACGGTTTGATGCGGGGCGATT
CACAAAAAGAAGTCAGTGGTTTGATTGATTACTTAGTTGCGTCAGGCTATTTACGGGCTTCTGGTGGTCAATATCCCGTT
TTACAGATCACGTTGGCGGGCGTCAAAGTACTTAAGGGTCAAGAAAAGGTGTCACGTAAAATGGCTGCTAAGGTTCAAAA
AACATTGCCTGAAGACAATGAGTTATTCGAACGCTTACGCGAATTACGCCGTGATTTAGCTGAAGAACAGGGTGTACCGC
CGTTTGTAATCTTCTCAGATAAGACGTTGTATTCAATGTGTGAAATTATACCAACCTCACTGACTGAAATGTTAGATGTT
AAAGGTGTCGGGGAGAATAAATTAGAAAAATATGGTGAATTATTCTTGGATATTTTAGTTGCTGAGTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(332-393)

DEAD/DEAH box helicase (DEAD)

(19-180)

HRDC domain (HRDC)

(513-579)

Helicase conserved C-terminal domain (Helicase_C)

(214-319)

RQC domain (RQC)

(396-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

52.332

99.485

0.521