Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   NC516_RS06820 Genome accession   NZ_CP099485
Coordinates   1357301..1357915 (+) Length   204 a.a.
NCBI ID   WP_011374972.1    Uniprot ID   Q38W54
Organism   Latilactobacillus sakei strain WiKim0095     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1352301..1362915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS06800 (NC516_06800) - 1352934..1354724 (-) 1791 WP_016265354.1 ABC transporter ATP-binding protein -
  NC516_RS06805 (NC516_06805) - 1354726..1356471 (-) 1746 WP_105300048.1 ABC transporter transmembrane domain-containing protein -
  NC516_RS06810 (NC516_06810) - 1356613..1356843 (-) 231 WP_011374970.1 YneF family protein -
  NC516_RS06815 (NC516_06815) - 1356924..1357166 (-) 243 WP_011374971.1 DUF896 domain-containing protein -
  NC516_RS06820 (NC516_06820) dinR/lexA 1357301..1357915 (+) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  NC516_RS06825 (NC516_06825) - 1358049..1358567 (-) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  NC516_RS06830 (NC516_06830) recJ 1358591..1360903 (-) 2313 WP_025016402.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NC516_RS06835 (NC516_06835) galE 1361048..1362040 (+) 993 WP_061827025.1 UDP-glucose 4-epimerase GalE -
  NC516_RS06840 (NC516_06840) - 1362126..1362491 (+) 366 WP_011374976.1 DUF1304 domain-containing protein -
  NC516_RS06845 (NC516_06845) - 1362508..1362834 (+) 327 WP_011374977.1 heavy metal-binding domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22567.96 Da        Isoelectric Point: 4.9705

>NTDB_id=601489 NC516_RS06820 WP_011374972.1 1357301..1357915(+) (dinR/lexA) [Latilactobacillus sakei strain WiKim0095]
MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDPTKPRAIELTPAGLTAIGATP
QKIPVLGVVTAGVPILAVEEATDYFPLPPSLQTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIAMTAEDE
ATCKRFFKEADHYRLQPENDTFEPIILNEVSILGKVVGLYRDRM

Nucleotide


Download         Length: 615 bp        

>NTDB_id=601489 NC516_RS06820 WP_011374972.1 1357301..1357915(+) (dinR/lexA) [Latilactobacillus sakei strain WiKim0095]
ATGACTAAAACTGAATCCAAACAATTAGAGGTCTTACGTTTTATTCACGAACGTGTTCAAGACAAAGGTTACCCACCAAC
GGTCCGCGAGATTTGCGAAGCCGTTAATTTATCGTCCACTTCTACTGTCCATGGCCATTTAGCCCGACTTGAGAAGAAGG
GCTTATTACAAAAGGATCCCACTAAGCCACGGGCGATCGAGTTAACGCCCGCTGGCCTAACGGCAATTGGGGCGACACCC
CAGAAAATACCAGTATTAGGGGTGGTTACTGCCGGTGTGCCTATCTTAGCAGTTGAAGAAGCAACTGATTACTTCCCGCT
TCCACCTAGTTTGCAAACCGAACAAGATTTGTTCATGCTAACAATTCGTGGTGAAAGTATGATTAATGCCGGTATCTTAG
ATGGCGACGAAGTTATCATTCGCAAGCAATCAACCGCCGATAATGGCGATATTGTCATTGCGATGACTGCCGAAGATGAA
GCAACCTGCAAACGGTTCTTCAAAGAAGCAGATCACTATCGTCTCCAACCAGAAAACGATACGTTTGAACCAATCATTTT
AAATGAAGTCAGCATTCTAGGGAAGGTCGTTGGCCTTTACCGAGATCGCATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(3-65)

Peptidase S24-like (Peptidase_S24)

(84-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38W54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

59.901

99.02

0.593