Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NC516_RS06475 Genome accession   NZ_CP099485
Coordinates   1274840..1275553 (+) Length   237 a.a.
NCBI ID   WP_016265311.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269840..1280553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS06455 (NC516_06455) - 1270212..1271012 (-) 801 WP_016265307.1 ChbG/HpnK family deacetylase -
  NC516_RS06460 (NC516_06460) - 1271021..1271512 (-) 492 WP_016265308.1 PTS glucose transporter subunit IIA -
  NC516_RS06465 (NC516_06465) - 1271526..1273175 (-) 1650 WP_016265309.1 alpha,alpha-phosphotrehalase -
  NC516_RS06470 (NC516_06470) - 1273189..1274667 (-) 1479 WP_016265310.1 PTS transporter subunit EIIC -
  NC516_RS06475 (NC516_06475) treR 1274840..1275553 (+) 714 WP_016265311.1 trehalose operon repressor Regulator
  NC516_RS06480 (NC516_06480) - 1275616..1276053 (-) 438 WP_016265312.1 hypothetical protein -
  NC516_RS06485 (NC516_06485) - 1276158..1278704 (-) 2547 WP_016265313.1 YfhO family protein -
  NC516_RS06490 (NC516_06490) - 1278871..1279737 (-) 867 WP_011374902.1 GRP family sugar transporter -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26798.60 Da        Isoelectric Point: 6.5879

>NTDB_id=601486 NC516_RS06475 WP_016265311.1 1274840..1275553(+) (treR) [Latilactobacillus sakei strain WiKim0095]
MSKKYEIIYRELVHKITNHVYPANSFLPSENELATAYGTSRETVRKALASLLENGFIHKIKGKGSLVLDFDKYAFPISGL
TSYRELDSLFEMHTQTTVLQLQKATVPQAPFHLDPTEILPATYIQRLRTVDGEPIVIDNDYVLTSVVPEISRAVAQDSLY
HYFEQELGLTIGYGNKEFTVIPATEEQCAILKLAPNSAVVSVKGITHLQDNTLIQFTESIHRADKFKFIEHARRQSI

Nucleotide


Download         Length: 714 bp        

>NTDB_id=601486 NC516_RS06475 WP_016265311.1 1274840..1275553(+) (treR) [Latilactobacillus sakei strain WiKim0095]
ATGTCGAAAAAATATGAAATAATCTACCGTGAACTCGTCCATAAAATTACGAACCATGTTTATCCAGCCAACTCATTCTT
ACCCAGCGAAAACGAACTCGCAACAGCGTATGGTACCTCACGCGAAACAGTCCGCAAAGCACTCGCTAGCCTTTTAGAAA
ATGGCTTCATTCATAAGATCAAAGGCAAAGGCTCTTTAGTCCTTGATTTTGATAAATACGCCTTTCCCATTTCCGGCTTA
ACCAGTTACCGCGAATTGGATAGTCTCTTTGAAATGCACACGCAAACAACAGTCCTACAACTCCAAAAAGCAACCGTTCC
ACAAGCGCCGTTTCATTTAGACCCCACAGAGATTCTACCCGCGACCTATATTCAACGGTTACGGACCGTTGATGGTGAAC
CAATTGTTATCGATAACGACTACGTTTTAACCAGTGTTGTCCCAGAAATCTCACGGGCAGTCGCTCAGGATTCACTTTAT
CACTACTTTGAACAAGAATTGGGTCTAACTATTGGTTATGGGAATAAAGAATTCACTGTTATCCCTGCAACCGAAGAACA
GTGTGCCATTTTAAAACTCGCCCCTAATAGTGCGGTCGTTAGTGTTAAAGGTATCACTCATCTTCAGGATAATACCTTAA
TTCAATTTACCGAATCCATTCACCGGGCTGATAAATTTAAGTTTATTGAACACGCGCGCCGCCAATCAATTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(5-67)

UTRA domain (UTRA)

(120-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.339

98.312

0.367