Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NC516_RS06230 Genome accession   NZ_CP099485
Coordinates   1235622..1237352 (-) Length   576 a.a.
NCBI ID   WP_011374848.1    Uniprot ID   Q38WI2
Organism   Latilactobacillus sakei strain WiKim0095     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1230622..1242352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS06210 (NC516_06210) - 1230843..1231487 (-) 645 WP_016265272.1 HD domain-containing protein -
  NC516_RS06215 (NC516_06215) manA 1231561..1232535 (-) 975 WP_016265273.1 mannose-6-phosphate isomerase, class I -
  NC516_RS06220 (NC516_06220) - 1232637..1233647 (-) 1011 WP_016265274.1 serine hydrolase domain-containing protein -
  NC516_RS06225 (NC516_06225) rcrQ 1233745..1235622 (-) 1878 WP_011374847.1 ABC transporter ATP-binding protein Regulator
  NC516_RS06230 (NC516_06230) rcrP 1235622..1237352 (-) 1731 WP_011374848.1 ABC transporter ATP-binding protein Regulator
  NC516_RS06235 (NC516_06235) - 1237376..1238017 (-) 642 WP_016265275.1 TetR family transcriptional regulator -
  NC516_RS06240 (NC516_06240) - 1238222..1238950 (+) 729 WP_016265276.1 ion transporter -
  NC516_RS06245 (NC516_06245) - 1239148..1239348 (-) 201 WP_004270328.1 cold-shock protein -
  NC516_RS06250 (NC516_06250) - 1239549..1240205 (+) 657 WP_016265277.1 type II CAAX endopeptidase family protein -
  NC516_RS06255 (NC516_06255) - 1240226..1240546 (+) 321 WP_016265278.1 hypothetical protein -
  NC516_RS06260 (NC516_06260) - 1240539..1240721 (+) 183 WP_016265279.1 hypothetical protein -
  NC516_RS06265 (NC516_06265) - 1240718..1241413 (-) 696 WP_011374854.1 YoaK family protein -
  NC516_RS06270 (NC516_06270) mgsA 1241497..1241919 (-) 423 WP_011374855.1 methylglyoxal synthase -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63754.90 Da        Isoelectric Point: 6.4076

>NTDB_id=601485 NC516_RS06230 WP_011374848.1 1235622..1237352(-) (rcrP) [Latilactobacillus sakei strain WiKim0095]
MIKLAKKRMSGLAVFGAVLFMVIQVVSNLYLPNLTSDIVNNGIAKGDIDYIWQAGFKMLGFSLISILAAICNVYLAAKTS
QGLGQKLRSDIYRKVINFSHDEMDQVGTSSLITRTTNDVVQIQNVAMMFLRMMIMAPIMLIGASFLAYQKNAQLTSIFVV
VLPLMAIFIGVVMYFAVPLFKAMQKKTDRINLVFREGLTGVRVIRAFRRDKFEQERFDDANLDYTQNAKKVYSIMSVMLP
VMTLIMSGTNIAITWMGGHLIADQAMQVGNLLAFMTYAMQILMSFMMLSMVFVFIPRAQASAVRINEVLDLQTPIENPEN
PKSFTDQTVSLAFDNVNFRYQNAEKLALEKIDFQASAGQTVAIIGGTGSGKSTLVNLIPRFYDVEAGQVQVDGLNVKDVT
LHDIHEQVAFVPQKANLFTGTIRENMQYGNPDATDDQIWHALEIAQSKDFVSELDGGLDSHVEQGGGNFSGGQRQRLAIA
RALVKRASVYVFDDSFSALDFKTDALLRKALKEDTEIQKSVVVIVGQRVSTVADADTILVLDEGQMVGKGTHAQLKATNA
TYQEIINSQIREGDEA

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=601485 NC516_RS06230 WP_011374848.1 1235622..1237352(-) (rcrP) [Latilactobacillus sakei strain WiKim0095]
ATGATTAAACTTGCAAAAAAGAGAATGTCGGGCTTAGCCGTTTTCGGTGCTGTCTTATTCATGGTGATTCAAGTTGTCAG
TAACTTGTATCTCCCTAATTTGACGTCTGATATTGTCAATAACGGGATTGCCAAAGGAGATATTGATTATATCTGGCAAG
CCGGCTTTAAAATGCTCGGTTTTTCATTGATCAGTATCCTAGCCGCAATCTGTAACGTTTATTTAGCTGCTAAGACATCA
CAAGGTCTGGGGCAAAAATTACGATCAGATATTTATCGAAAGGTCATCAATTTCTCACACGATGAAATGGACCAAGTGGG
GACCTCTTCACTGATTACACGGACGACCAATGATGTTGTTCAAATTCAAAATGTGGCAATGATGTTCTTACGAATGATGA
TCATGGCCCCTATTATGTTGATTGGTGCCAGCTTCTTGGCTTACCAAAAGAACGCGCAATTAACATCAATCTTCGTCGTT
GTCTTACCATTGATGGCAATCTTTATCGGTGTCGTGATGTACTTTGCCGTGCCACTTTTCAAAGCGATGCAAAAGAAGAC
TGACCGGATTAACTTAGTTTTCCGTGAAGGCTTAACAGGGGTGCGGGTAATCCGTGCATTCCGTCGCGATAAGTTCGAAC
AGGAACGTTTTGACGATGCGAACTTAGATTACACACAAAATGCTAAAAAGGTCTACAGTATCATGTCTGTCATGTTACCT
GTGATGACATTGATTATGAGTGGGACAAACATTGCAATCACTTGGATGGGTGGTCACTTAATTGCTGATCAAGCCATGCA
AGTGGGGAACTTATTAGCCTTCATGACTTATGCGATGCAAATCTTAATGAGTTTCATGATGCTTTCAATGGTTTTCGTCT
TCATTCCACGGGCACAAGCATCAGCCGTTCGGATTAATGAAGTCTTGGATTTACAAACACCAATTGAAAATCCAGAAAAT
CCCAAGAGTTTTACAGATCAAACTGTCAGCTTGGCCTTCGATAATGTTAACTTCCGCTACCAAAATGCAGAAAAATTAGC
CTTAGAGAAGATTGATTTCCAAGCATCTGCTGGTCAAACCGTTGCGATTATCGGGGGGACTGGTTCAGGTAAATCAACCT
TGGTTAACTTGATTCCGCGTTTTTACGACGTTGAAGCCGGCCAAGTCCAAGTTGATGGGTTAAATGTCAAAGATGTGACA
TTGCATGATATTCATGAACAAGTCGCATTTGTACCGCAAAAAGCCAATCTCTTTACAGGGACGATTCGCGAAAATATGCA
ATATGGGAATCCGGATGCAACTGATGATCAGATTTGGCATGCACTTGAAATTGCCCAATCGAAGGATTTCGTTAGCGAAC
TTGATGGTGGCTTAGACAGTCACGTTGAACAAGGTGGCGGTAACTTCTCAGGTGGTCAACGTCAACGATTAGCGATTGCC
CGGGCATTAGTTAAACGCGCATCAGTTTATGTTTTTGATGATTCATTTTCAGCTTTAGATTTCAAGACGGATGCCCTTTT
ACGCAAAGCCTTGAAGGAAGATACTGAAATTCAAAAGAGTGTCGTCGTCATTGTTGGACAACGGGTCTCAACTGTGGCTG
ATGCCGATACAATCTTGGTCTTAGATGAAGGCCAAATGGTTGGTAAAGGCACGCATGCCCAATTAAAGGCAACAAATGCA
ACTTACCAAGAAATTATCAATTCACAAATCAGAGAGGGGGATGAAGCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(348-495)

ABC transporter transmembrane region (ABC_membrane)

(15-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.376

97.917

0.415