Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NC516_RS06225 Genome accession   NZ_CP099485
Coordinates   1233745..1235622 (-) Length   625 a.a.
NCBI ID   WP_011374847.1    Uniprot ID   Q38WI3
Organism   Latilactobacillus sakei strain WiKim0095     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228745..1240622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS06195 (NC516_06195) - 1228986..1229609 (+) 624 WP_016265269.1 helix-turn-helix transcriptional regulator -
  NC516_RS06200 (NC516_06200) - 1229629..1230426 (+) 798 WP_016265270.1 pyruvate, water dikinase regulatory protein -
  NC516_RS06205 (NC516_06205) - 1230548..1230793 (+) 246 WP_016265271.1 hypothetical protein -
  NC516_RS06210 (NC516_06210) - 1230843..1231487 (-) 645 WP_016265272.1 HD domain-containing protein -
  NC516_RS06215 (NC516_06215) manA 1231561..1232535 (-) 975 WP_016265273.1 mannose-6-phosphate isomerase, class I -
  NC516_RS06220 (NC516_06220) - 1232637..1233647 (-) 1011 WP_016265274.1 serine hydrolase domain-containing protein -
  NC516_RS06225 (NC516_06225) rcrQ 1233745..1235622 (-) 1878 WP_011374847.1 ABC transporter ATP-binding protein Regulator
  NC516_RS06230 (NC516_06230) rcrP 1235622..1237352 (-) 1731 WP_011374848.1 ABC transporter ATP-binding protein Regulator
  NC516_RS06235 (NC516_06235) - 1237376..1238017 (-) 642 WP_016265275.1 TetR family transcriptional regulator -
  NC516_RS06240 (NC516_06240) - 1238222..1238950 (+) 729 WP_016265276.1 ion transporter -
  NC516_RS06245 (NC516_06245) - 1239148..1239348 (-) 201 WP_004270328.1 cold-shock protein -
  NC516_RS06250 (NC516_06250) - 1239549..1240205 (+) 657 WP_016265277.1 type II CAAX endopeptidase family protein -
  NC516_RS06255 (NC516_06255) - 1240226..1240546 (+) 321 WP_016265278.1 hypothetical protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 69669.07 Da        Isoelectric Point: 5.2493

>NTDB_id=601484 NC516_RS06225 WP_011374847.1 1233745..1235622(-) (rcrQ) [Latilactobacillus sakei strain WiKim0095]
MAEKAATNRPQGGHGPGRGMGGVVEKPKNFWGTTNRLLKYMSSRLIALVFVIVLAIVSVIFQIRTPKVLGEATTEIFKGV
MKGNAMQKAGIAMDRLPIDFDKIQHIIMTVILMYLASAVFSFLQQFIMTRISQQTVYELRKELKDKMQRVPINYYDTHSN
GDIMSRAINDMDNIASTLQQSLTQMVTSTVTFIGVLWMMLTISWQLTLIALVTIPLSLIVVGIVAPKSQKFFAAQQKSLG
LLNNQIEENFSGQVVLKTFNREQVTIDTFEEQNEKLYKAAWKAQFISGVIMPLMTFVNNLGYVFVAIIGGIRVSHGQVTL
GDMQAFMQYTQQFSQPISQLANLANTIQSTIASAERVFAVLDEEDMSEEPSTVPVVQDDANQLEMEHVEFGYQGKDLLLT
DYNLQVKPGQMIAIVGPTGAGKTTIINLLERFYDVSGGSIKLKGVDTRDMSREELRSHFAMVLQDTWLFTGTIWDNLKYG
NESASDEAILAAAKAAHVDGFVRQLPEGYNTVLNEEASNISQGQRQLLTIARAFVADPDILILDEATSSVDTRTEIHIQH
AMERLLQNRTSFVVAHRLSTIRDADNIIVMNHGSIMETGTHDELMVQDGFYADLYNSQFSGNVEI

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=601484 NC516_RS06225 WP_011374847.1 1233745..1235622(-) (rcrQ) [Latilactobacillus sakei strain WiKim0095]
ATGGCAGAAAAAGCAGCAACAAACCGGCCACAAGGTGGTCACGGTCCAGGTCGCGGCATGGGTGGCGTCGTTGAAAAGCC
TAAGAATTTCTGGGGCACAACTAATCGTTTATTGAAATACATGTCGAGCCGTTTAATTGCCTTAGTATTTGTCATTGTTT
TGGCGATTGTCTCCGTTATTTTCCAGATTAGAACGCCCAAAGTTTTAGGGGAAGCAACAACTGAAATCTTTAAAGGGGTG
ATGAAAGGCAATGCCATGCAAAAAGCTGGGATTGCAATGGATCGCTTACCAATTGATTTCGATAAGATTCAACACATTAT
CATGACGGTGATCTTGATGTATCTTGCTTCAGCCGTCTTCAGTTTCTTACAACAATTTATTATGACGCGGATTTCACAAC
AAACCGTCTATGAATTGCGTAAGGAATTGAAAGATAAGATGCAACGAGTGCCAATCAATTATTACGATACCCATTCAAAC
GGGGATATCATGAGTCGTGCGATTAATGATATGGATAATATTGCCAGCACGCTACAACAAAGTTTAACGCAAATGGTGAC
CAGCACGGTAACGTTTATCGGTGTTTTATGGATGATGCTGACGATCAGTTGGCAATTAACGCTGATTGCTTTGGTCACAA
TTCCGTTGAGTTTAATTGTCGTTGGGATTGTCGCACCTAAGTCGCAAAAATTCTTTGCTGCACAACAAAAGAGTTTAGGC
TTATTAAATAATCAAATCGAAGAAAACTTTTCCGGTCAAGTGGTCTTGAAGACCTTTAACCGGGAACAAGTGACGATTGA
TACGTTTGAAGAACAAAATGAAAAGTTGTATAAAGCTGCTTGGAAAGCCCAATTTATCTCTGGGGTGATCATGCCATTGA
TGACTTTCGTCAATAACTTAGGGTACGTCTTCGTTGCGATTATCGGTGGGATTCGCGTCTCACACGGTCAAGTCACATTA
GGGGACATGCAGGCTTTCATGCAATATACACAACAATTCTCACAACCAATCTCACAATTGGCTAACTTGGCAAACACAAT
TCAATCAACGATTGCTTCAGCTGAACGGGTTTTTGCTGTTTTAGATGAAGAAGATATGTCTGAAGAACCTTCAACTGTCC
CAGTTGTGCAAGATGATGCCAACCAATTAGAAATGGAACATGTTGAATTTGGTTACCAAGGCAAGGATCTCTTGTTGACG
GACTATAATTTACAAGTTAAACCGGGCCAAATGATCGCGATTGTTGGTCCTACCGGGGCTGGTAAGACAACTATTATTAA
TTTACTTGAACGTTTCTACGATGTTAGTGGCGGTTCGATTAAATTAAAAGGTGTCGATACACGTGATATGAGTCGGGAAG
AATTGCGGAGTCATTTTGCGATGGTTCTTCAAGATACTTGGCTATTCACCGGGACGATTTGGGATAACTTGAAGTACGGT
AATGAATCAGCTTCAGACGAAGCGATTTTGGCAGCTGCTAAAGCAGCCCATGTTGATGGCTTTGTTCGTCAATTACCTGA
AGGTTATAACACAGTCTTGAATGAAGAAGCTTCAAATATTTCACAAGGTCAACGGCAATTATTGACGATTGCCCGGGCCT
TTGTGGCCGATCCAGATATCTTAATCTTGGATGAAGCAACCAGTTCTGTTGATACGCGGACTGAAATTCATATCCAACAC
GCAATGGAACGTCTATTGCAAAATCGAACGAGTTTCGTTGTTGCCCATCGTTTATCAACGATTCGGGATGCGGATAATAT
CATTGTGATGAATCACGGTTCAATTATGGAAACCGGCACACATGATGAATTGATGGTTCAAGACGGCTTTTACGCTGATC
TATATAACAGCCAATTCTCAGGGAACGTCGAGATTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(399-548)

ABC transporter transmembrane region (ABC_membrane)

(49-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.464

92.48

0.411