Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   K7H19_RS09995 Genome accession   NZ_CP082323
Coordinates   1849192..1849500 (+) Length   102 a.a.
NCBI ID   WP_024119555.1    Uniprot ID   -
Organism   Thermus thermophilus strain N-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1844192..1854500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7H19_RS09965 (K7H19_09965) - 1845273..1845737 (+) 465 WP_011229049.1 hypothetical protein -
  K7H19_RS09970 (K7H19_09970) pfkA 1845714..1846682 (-) 969 WP_011173968.1 6-phosphofructokinase -
  K7H19_RS09975 (K7H19_09975) rsmI 1846679..1847473 (-) 795 WP_011229050.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  K7H19_RS09980 (K7H19_09980) - 1847475..1847969 (-) 495 WP_011229051.1 hypothetical protein -
  K7H19_RS09985 (K7H19_09985) - 1848033..1848560 (-) 528 WP_011173971.1 inorganic diphosphatase -
  K7H19_RS09990 (K7H19_09990) - 1848593..1849219 (+) 627 WP_011173972.1 YcxB family protein -
  K7H19_RS09995 (K7H19_09995) comEA 1849192..1849500 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  K7H19_RS10000 (K7H19_10000) comA/comEC 1849497..1851530 (+) 2034 WP_011229052.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K7H19_RS10005 (K7H19_10005) - 1851518..1852327 (-) 810 WP_011229053.1 ParB/RepB/Spo0J family partition protein -
  K7H19_RS10010 (K7H19_10010) soj 1852311..1853060 (-) 750 WP_011229054.1 chromosome-partitioning ATPase Soj -
  K7H19_RS10015 (K7H19_10015) rsmG 1853054..1853803 (-) 750 WP_143591821.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10947.23 Da        Isoelectric Point: 10.3435

>NTDB_id=601484 K7H19_RS09995 WP_024119555.1 1849192..1849500(+) (comEA) [Thermus thermophilus strain N-1]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=601484 K7H19_RS09995 WP_024119555.1 1849192..1849500(+) (comEA) [Thermus thermophilus strain N-1]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAAGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTGGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

100

100

1
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.815

100

0.422