Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   NC516_RS05575 Genome accession   NZ_CP099485
Coordinates   1101157..1102602 (-) Length   481 a.a.
NCBI ID   WP_061826989.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096157..1107602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS05550 (NC516_05550) - 1096308..1096583 (-) 276 WP_011374717.1 HU family DNA-binding protein -
  NC516_RS05555 (NC516_05555) der 1096790..1098100 (-) 1311 WP_016265173.1 ribosome biogenesis GTPase Der -
  NC516_RS05560 (NC516_05560) rpsA 1098334..1099545 (-) 1212 WP_061826990.1 30S ribosomal protein S1 -
  NC516_RS05565 (NC516_05565) cmk 1099640..1100299 (-) 660 WP_016265175.1 (d)CMP kinase -
  NC516_RS05570 (NC516_05570) - 1100366..1101088 (-) 723 WP_035145827.1 LysM domain-containing protein -
  NC516_RS05575 (NC516_05575) recS 1101157..1102602 (-) 1446 WP_061826989.1 RecQ family ATP-dependent DNA helicase Machinery gene
  NC516_RS05580 (NC516_05580) - 1102599..1103627 (-) 1029 WP_105300148.1 helix-turn-helix domain-containing protein -
  NC516_RS05585 (NC516_05585) - 1103664..1103894 (+) 231 WP_016265179.1 ferredoxin -
  NC516_RS05590 (NC516_05590) - 1103970..1104545 (-) 576 WP_016265180.1 ECF transporter S component -
  NC516_RS05595 (NC516_05595) - 1104861..1105631 (-) 771 WP_011374726.1 pseudouridine synthase -
  NC516_RS05600 (NC516_05600) scpB 1105634..1106257 (-) 624 WP_016265182.1 SMC-Scp complex subunit ScpB -
  NC516_RS05605 (NC516_05605) - 1106241..1106996 (-) 756 WP_035145834.1 segregation/condensation protein A -
  NC516_RS05610 (NC516_05610) - 1107005..1107373 (-) 369 WP_016265184.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54511.27 Da        Isoelectric Point: 5.4346

>NTDB_id=601473 NC516_RS05575 WP_061826989.1 1101157..1102602(-) (recS) [Latilactobacillus sakei strain WiKim0095]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIQSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKHQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAT
IKAQLQPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLANLVQKSQGPGIIYFSS
RQKTMEIAAFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRYVIHYHLPQNIESYLQEI
GRAGRDGQPAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGNEFELLRRYQQLGMTEEEVIKLLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSGTCCGEQDSTDFLAQLDLEQAINYKTTETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=601473 NC516_RS05575 WP_061826989.1 1101157..1102602(-) (recS) [Latilactobacillus sakei strain WiKim0095]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTCAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACCGGGACTGGGAAGTCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTCGCCCAATTGAAT
TACCAAGGGGAAAAGCGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAACACCAGTTACTGACGCATTTAGC
GGATTACCGCTTTATTTTTATGGCACCGGAGACCATCAGTCAACCAGAAGTGATTCAGGCGCTTCAACGTTGTCAAATCG
ATTTGTTTGTGGTTGATGAGGCCCATTGTATTTCACAGTGGGGAATTGATTTTAGACCGGACTATTTAGTTTTAGCAACC
ATCAAGGCCCAATTACAGCCAACTGCAACACTGGCTTTGACGGCGACCGCCAATGACCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCGAAGAACCAATTTTTAGCCAACTTAGTGCAAAAAAGCCAGGGTCCCGGGATTATTTACTTTTCAAGT
CGGCAAAAGACGATGGAGATTGCGGCCTTTTTGCAGCAAGAAACTGATCTGAAGATTGCGTATTACCACGCGGCGTTATC
AACCCAGGAGCGGTATTTGATTCAACAACAATTTATGCAAGGGCAACTTGATTTGATTTGTACAACCAATGCTTTTGGGA
TGGGGATTAATAAGGCGGATATTCGCTATGTGATTCATTATCACCTGCCACAAAACATCGAAAGTTACTTGCAAGAAATC
GGACGGGCAGGCCGAGATGGGCAACCAGCCTATGCTTTAGTCCTAACAACTCCGCAAGATTTATATTTACAACAATCACT
CGTTTCATTTGGAATTCCGGAACCAGGCCTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
ATGAATTTGAACTACTACGTCGCTACCAGCAACTGGGGATGACCGAAGAAGAGGTCATTAAGTTATTGGATAATCGTCAA
ACCGAAAAGCAGTTTTCACTACAAACGATGCTGGATTATTTGACCCTCAAGGGCTGTCGACGGCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGGAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAAGCTATTAATTATAAAACCACTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(22-181)

Helicase conserved C-terminal domain (Helicase_C)

(219-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

42.257

93.971

0.397