Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   NC516_RS05315 Genome accession   NZ_CP099485
Coordinates   1045230..1046288 (+) Length   352 a.a.
NCBI ID   WP_025015780.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1040230..1051288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS05290 (NC516_05290) - 1040523..1041023 (-) 501 WP_025015782.1 DUF1836 domain-containing protein -
  NC516_RS05295 (NC516_05295) - 1041184..1041822 (+) 639 WP_016265118.1 hemolysin III family protein -
  NC516_RS05300 (NC516_05300) - 1041851..1042693 (+) 843 WP_011374666.1 DegV family protein -
  NC516_RS05305 (NC516_05305) - 1042819..1043400 (+) 582 WP_011374667.1 TetR/AcrR family transcriptional regulator -
  NC516_RS05310 (NC516_05310) - 1043402..1044409 (+) 1008 WP_025015781.1 NADP-dependent oxidoreductase -
  NC516_RS05315 (NC516_05315) xerS 1045230..1046288 (+) 1059 WP_025015780.1 tyrosine recombinase XerS Machinery gene
  NC516_RS05320 (NC516_05320) thiT 1046502..1047104 (+) 603 WP_025015779.1 energy-coupled thiamine transporter ThiT -
  NC516_RS05325 (NC516_05325) - 1047144..1048937 (-) 1794 WP_025015778.1 heavy metal translocating P-type ATPase -
  NC516_RS05330 (NC516_05330) - 1049038..1049391 (-) 354 WP_025015777.1 hypothetical protein -
  NC516_RS05335 (NC516_05335) - 1049448..1050371 (-) 924 WP_252814884.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 40719.63 Da        Isoelectric Point: 9.1623

>NTDB_id=601470 NC516_RS05315 WP_025015780.1 1045230..1046288(+) (xerS) [Latilactobacillus sakei strain WiKim0095]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKANNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFIAFMQVDYPSALSNRQLASYTQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=601470 NC516_RS05315 WP_025015780.1 1045230..1046288(+) (xerS) [Latilactobacillus sakei strain WiKim0095]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGCAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCCGATGGTGAGCCTTATTTCTACCGCAACGTCA
TGAAAAAAGTCAAACTGCTCAAATCATCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGT
GATAAAAAACACGACTTCATTGCCTTTATGCAAGTCGACTATCCCAGTGCGCTATCTAATCGCCAACTCGCTTCTTATAC
GCAGAATTGTGAACGGGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

46.067

100

0.466