Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NC516_RS05045 Genome accession   NZ_CP099485
Coordinates   995701..996333 (-) Length   210 a.a.
NCBI ID   WP_035146917.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 990701..1001333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS05030 (NC516_05030) - 992009..992632 (+) 624 WP_011374617.1 DnaD domain protein -
  NC516_RS05035 (NC516_05035) nth 992656..993306 (+) 651 WP_035146924.1 endonuclease III -
  NC516_RS05040 (NC516_05040) - 993391..995694 (-) 2304 WP_035146921.1 PBP1A family penicillin-binding protein -
  NC516_RS05045 (NC516_05045) recU 995701..996333 (-) 633 WP_035146917.1 Holliday junction resolvase RecU Machinery gene
  NC516_RS05050 (NC516_05050) - 996409..996969 (+) 561 WP_016265078.1 DUF1273 domain-containing protein -
  NC516_RS05055 (NC516_05055) gpsB 997049..997429 (+) 381 WP_011374622.1 cell division regulator GpsB -
  NC516_RS05065 (NC516_05065) - 997919..999070 (+) 1152 WP_011374623.1 class I SAM-dependent RNA methyltransferase -
  NC516_RS05070 (NC516_05070) - 999173..1000126 (+) 954 WP_011374624.1 phosphoglycerate dehydrogenase -
  NC516_RS05075 (NC516_05075) - 1000181..1000570 (-) 390 WP_011374625.1 DUF1398 domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24155.41 Da        Isoelectric Point: 9.4518

>NTDB_id=601469 NC516_RS05045 WP_035146917.1 995701..996333(-) (recU) [Latilactobacillus sakei strain WiKim0095]
MAFHYPNGQPYSNHETKQPKKQGRHTSPTTLYGKRGMSLEEEINDSNQYYRLRDAAVIYKKPTPIQIVKVDYPARSQAVI
KEAYFKQASTTDYNGIYQGHYVDFEAKETKNKTSFPFQNFHQHQIDHFRACLQQGGVCFVIMKFVPLQRLFVYPANLLIT
QWDNQATGGRKSIPLAAIVADGFEIQYQLNPSIPYLEAVDQLIARHHKGV

Nucleotide


Download         Length: 633 bp        

>NTDB_id=601469 NC516_RS05045 WP_035146917.1 995701..996333(-) (recU) [Latilactobacillus sakei strain WiKim0095]
ATGGCCTTTCATTATCCAAACGGACAGCCCTACTCAAATCATGAAACAAAACAGCCTAAAAAGCAAGGGCGACATACTAG
TCCAACCACCTTATACGGTAAACGCGGTATGTCATTAGAAGAAGAGATCAACGATAGTAATCAATATTATCGACTACGTG
ATGCTGCGGTTATCTATAAGAAACCCACCCCTATTCAGATCGTTAAGGTTGATTATCCAGCACGTAGTCAAGCTGTTATT
AAGGAAGCCTACTTTAAGCAAGCTTCAACAACGGATTATAATGGCATCTATCAGGGGCACTATGTGGATTTTGAAGCGAA
GGAAACTAAGAATAAAACGTCATTTCCGTTCCAAAACTTTCACCAACATCAAATTGATCATTTTAGAGCTTGCTTACAAC
AAGGCGGGGTTTGTTTTGTGATTATGAAGTTCGTCCCACTTCAACGTTTATTTGTGTATCCGGCAAACTTATTGATTACA
CAATGGGACAATCAAGCAACTGGTGGTCGGAAGTCAATTCCACTAGCGGCGATCGTTGCCGATGGGTTTGAAATTCAGTA
TCAATTAAACCCAAGTATTCCCTATTTAGAGGCCGTCGATCAATTAATCGCACGCCACCACAAAGGAGTTTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(35-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.246

94.762

0.467