Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K6806_RS13110 Genome accession   NZ_CP082319
Coordinates   2748091..2748609 (-) Length   172 a.a.
NCBI ID   WP_054574813.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain XWV9     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2743091..2753609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6806_RS13085 (K6806_12975) rimM 2743180..2743728 (-) 549 WP_238952114.1 ribosome maturation factor RimM -
  K6806_RS13090 (K6806_12980) rpsP 2743758..2744006 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  K6806_RS13095 (K6806_12985) ffh 2744216..2745598 (-) 1383 WP_005385423.1 signal recognition particle protein -
  K6806_RS13100 (K6806_12990) - 2745823..2746617 (+) 795 WP_005379950.1 inner membrane protein YpjD -
  K6806_RS13105 (K6806_12995) - 2746742..2748022 (+) 1281 WP_005379948.1 CNNM domain-containing protein -
  K6806_RS13110 (K6806_13000) luxS 2748091..2748609 (-) 519 WP_054574813.1 S-ribosylhomocysteine lyase Regulator
  K6806_RS13115 (K6806_13005) - 2748694..2749299 (-) 606 WP_238952115.1 hypothetical protein -
  K6806_RS13120 (K6806_13010) gshA 2749323..2750891 (-) 1569 WP_054574812.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19102.89 Da        Isoelectric Point: 5.0212

>NTDB_id=601427 K6806_RS13110 WP_054574813.1 2748091..2748609(-) (luxS) [Vibrio alginolyticus strain XWV9]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSERQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=601427 K6806_RS13110 WP_054574813.1 2748091..2748609(-) (luxS) [Vibrio alginolyticus strain XWV9]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCGGCAGTGCGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGATTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCGGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86